Salmonella in dairy cattle

CL Holschbach, SF Peek - The Veterinary Clinics of North …, 2017 - pmc.ncbi.nlm.nih.gov
As an infectious, contagious pathogen, Salmonella is probably rivaled by only bovine viral
diarrhea virus in its ability to cause clinical disease, such as enteritis, septicemia …

Typing methods based on whole genome sequencing data

L Uelze, J Grützke, M Borowiak, JA Hammerl… - One Health …, 2020 - Springer
Whole genome sequencing (WGS) of foodborne pathogens has become an effective
method for investigating the information contained in the genome sequence of bacterial …

SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data

S Zhang, HC Den Bakker, S Li, J Chen… - Applied and …, 2019 - Am Soc Microbiol
SeqSero, launched in 2015, is a software tool for Salmonella serotype determination from
whole-genome sequencing (WGS) data. Despite its routine use in public health and food …

Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms

EFSA Panel on Biological Hazards (EFSA … - EFSA …, 2019 - Wiley Online Library
This Opinion considers the application of whole genome sequencing (WGS) and
metagenomics for outbreak investigation, source attribution and risk assessment of food …

Prevalence and risk factors of Salmonella in commercial poultry farms in Nigeria

AH Jibril, IN Okeke, A Dalsgaard, E Kudirkiene… - PLoS …, 2020 - journals.plos.org
Salmonella is an important human pathogen and poultry products constitute an important
source of human infections. This study investigated prevalence; identified serotypes based …

Salmonella Serotyping Using Whole Genome Sequencing

GM Ibrahim, PM Morin - Frontiers in microbiology, 2018 - frontiersin.org
Until recently, traditional serology and the Kauffmann White Scheme (KWS) have been the
gold standard for Salmonella serotyping. Whole Genome Sequencing (WGS) has now …

Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data

B Diep, C Barretto, AC Portmann, C Fournier… - Frontiers in …, 2019 - frontiersin.org
Salmonella is one of the most common causes of food-borne diseases worldwide. While
Salmonella molecular subtyping by Whole Genome Sequencing (WGS) is increasingly used …

Genome-based Salmonella serotyping as the new gold standard

S Banerji, S Simon, A Tille, A Fruth, A Flieger - Scientific reports, 2020 - nature.com
Salmonella enterica is the second most reported bacterial cause of food-borne infections in
Europe. Therefore molecular surveillance activities based on pathogen subtyping are an …

Systematic Evaluation of Whole Genome Sequence-Based Predictions of Salmonella Serotype and Antimicrobial Resistance

AL Cooper, AJ Low, AG Koziol, MC Thomas… - Frontiers in …, 2020 - frontiersin.org
Whole-genome sequencing (WGS) is used increasingly in public-health laboratories for
typing and characterizing foodborne pathogens. To evaluate the performance of existing …

The integrated genomic surveillance system of Andalusia (SIEGA) provides a One Health regional resource connected with the clinic

CS Casimiro-Soriguer, J Pérez-Florido, EA Robles… - Scientific reports, 2024 - nature.com
Abstract The One Health approach, recognizing the interconnectedness of human, animal,
and environmental health, has gained significance amid emerging zoonotic diseases and …