Origin and evolution of spliceosomal introns

IB Rogozin, L Carmel, M Csuros, EV Koonin - Biology direct, 2012 - Springer
Evolution of exon-intron structure of eukaryotic genes has been a matter of long-standing,
intensive debate. The introns-early concept, later rebranded 'introns first'held that protein …

The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification.

T Cavalier-Smith - International journal of systematic and …, 2002 - microbiologyresearch.org
Prokaryotes constitute a single kingdom, Bacteria, here divided into two new subkingdoms:
Negibacteria, with a cell envelope of two distinct genetic membranes, and Unibacteria …

[HTML][HTML] Cytochromes P450

S Bak, F Beisson, G Bishop, B Hamberger… - The Arabidopsis Book …, 2011 - ncbi.nlm.nih.gov
There are 244 cytochrome P450 genes (and 28 pseudogenes) in the Arabidopsis genome.
P450s thus form one of the largest gene families in plants. Contrary to what was initially …

Immunity-Related Genes and Gene Families in Anopheles gambiae

GK Christophides, E Zdobnov, C Barillas-Mury… - Science, 2002 - science.org
We have identified 242 Anopheles gambiae genes from 18 gene families implicated in
innate immunity and have detected marked diversification relative to Drosophila …

The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism

E Waters, MJ Hohn, I Ahel… - Proceedings of the …, 2003 - National Acad Sciences
The hyperthermophile Nanoarchaeum equitans is an obligate symbiont growing in coculture
with the crenarchaeon Ignicoccus. Ribosomal protein and rRNA-based phylogenies place …

[HTML][HTML] Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution

IB Rogozin, YI Wolf, AV Sorokin, BG Mirkin, EV Koonin - Current Biology, 2003 - cell.com
Sequencing of eukaryotic genomes allows one to address major evolutionary problems,
such as the evolution of gene structure. We compared the intron positions in 684 …

Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogaster

EM Zdobnov, C Von Mering, I Letunic, D Torrents… - science, 2002 - science.org
Comparison of the genomes and proteomes of the two diptera Anopheles gambiae and
Drosophila melanogaster, which diverged about 250 million years ago, reveals …

On the origin of family 1 plant glycosyltransferases

S Paquette, BL Møller, S Bak - Phytochemistry, 2003 - Elsevier
The phylogeny of highly divergent multigene families is often difficult to validate but can be
substantiated by inclusion of data outside of the phylogeny, such as signature motifs, intron …

Evolutionary fates and origins of U12-type introns

CB Burge, RA Padgett, PA Sharp - Molecular cell, 1998 - cell.com
Abstract U2-type and U12-type introns are spliced by distinct spliceosomes in eukaryotic
nuclei. A classification method was devised to distinguish these two types of introns based …

Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution

GE Larue, SW Roy - Nucleic Acids Research, 2023 - academic.oup.com
Spliceosomal introns are gene segments removed from RNA transcripts by
ribonucleoprotein machineries called spliceosomes. In some eukaryotes a second …