Coalescent-based species delimitation in an integrative taxonomy

MK Fujita, AD Leaché, FT Burbrink, JA McGuire… - Trends in ecology & …, 2012 - cell.com
The statistical rigor of species delimitation has increased dramatically over the past decade.
Coalescent theory provides powerful models for population genetic inference, and is now …

The taxonomic impediment: a shortage of taxonomists, not the lack of technical approaches

MS Engel, LMP Ceríaco, GM Daniel… - Zoological Journal of …, 2021 - academic.oup.com
For almost 30 years, there have been active discussions about the taxonomic impediment
and the challenge this represents to address the current human-induced biodiversity crisis …

New concepts and methods for phylogenetic taxonomy and nomenclature in zoology, exemplified by a new ranked cladonomy of recent amphibians (Lissamphibia)

A Dubois, A Ohler, RA Pyron - Megataxa, 2021 - biotaxa.org
Although currently most taxonomists claim to adhere to the concept of 'phylogenetic
taxonomy', in fact most of the zoological classifications currently published are only in part …

Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo

P Kapli, S Lutteropp, J Zhang, K Kobert… - …, 2017 - academic.oup.com
Motivation In recent years, molecular species delimitation has become a routine approach
for quantifying and classifying biodiversity. Barcoding methods are of particular importance …

Is population subdivision different from speciation? From phylogeography to species delimitation

JP Huang - Ecology and Evolution, 2020 - Wiley Online Library
Species‐level diversity and the underlying mechanisms that lead to the formation of new
species, that is, speciation, have often been confounded with intraspecific diversity and …

Species delimitation using genome-wide SNP data

AD Leaché, MK Fujita, VN Minin… - Systematic …, 2014 - academic.oup.com
The multispecies coalescent has provided important progress for evolutionary inferences,
including increasing the statistical rigor and objectivity of comparisons among competing …

[HTML][HTML] How to describe a cryptic species? Practical challenges of molecular taxonomy

KM Jörger, M Schrödl - Frontiers in zoology, 2013 - Springer
Background Molecular methods of species delineation are rapidly developing and widely
considered as fast and efficient means to discover species and face the'taxonomic …

[图书][B] Molecular evolution: a statistical approach

Z Yang - 2014 - books.google.com
Studies of evolution at the molecular level have experienced phenomenal growth in the last
few decades, due to rapid accumulation of genetic sequence data, improved computer …

Bayesian species delimitation combining multiple genes and traits in a unified framework

C Solís-Lemus, LL Knowles, C Ané - Evolution, 2015 - academic.oup.com
Delimitation of species based exclusively on genetic data has been advocated despite a
critical knowledge gap: how might such approaches fail because they rely on genetic data …

Evaluation of a Bayesian coalescent method of species delimitation

C Zhang, DX Zhang, T Zhu, Z Yang - Systematic biology, 2011 - academic.oup.com
A Bayesian coalescent-based method has recently been proposed to delimit species using
multilocus genetic sequence data. Posterior probabilities of different species delimitation …