Background Lately, there has been a great interest in the application of information
extraction methods to the biomedical domain, in particular, to the extraction of relationships …

Abstract Background Advanced Text Mining (TM) such as semantic enrichment of papers,
event or relation extraction, and intelligent Question Answering have increasingly attracted …

Background The exploitation of information extraction (IE), a technology aiming to provide
instances of structured representations from free-form text, has been rapidly growing within …

Background Propositional representations of biomedical knowledge are a critical
component of most aspects of semantic mining in biomedicine. However, the proper set of …

Background A protein annotation database, such as the Universal Protein Resource
knowledge base (UniProtKb), is a valuable resource for the validation and interpretation of …

Background This paper presents data on alternations in the argument structure of common
domain-specific verbs and their associated verbal nominalizations in the PennBioIE corpus …

In this paper, we present a semiautomatic approach for annotating semantic information in
biomedical texts. The information is used to construct a biomedical proposition bank called …

This paper describes the supporting resources provided for the BioNLP Shared Task 2011.
These resources were constructed with the goal to alleviate some of the burden of system …

Ontologies are recognised as important tools, not only for effective and efficient information
sharing, but also for information extraction and text mining. In the biomedical domain, the …

Transcript diversity generated by alternative splicing and associated mechanisms
contributes heavily to the functional complexity of biological systems. The numerous …