Accelerating crop genetic gains with genomic selection

KP Voss-Fels, M Cooper, BJ Hayes - Theoretical and Applied Genetics, 2019 - Springer
Key message Genomic prediction based on additive genetic effects can accelerate genetic
gain. There are opportunities for further improvement by including non-additive effects that …

Integrated approach in genomic selection to accelerate genetic gain in sugarcane

KS Sandhu, A Shiv, G Kaur, MR Meena, AK Raja… - Plants, 2022 - mdpi.com
Marker-assisted selection (MAS) has been widely used in the last few decades in plant
breeding programs for the mapping and introgression of genes for economically important …

Phenomic selection is a low-cost and high-throughput method based on indirect predictions: proof of concept on wheat and poplar

R Rincent, JP Charpentier… - G3: Genes …, 2018 - academic.oup.com
Genomic selection-the prediction of breeding values using DNA polymorphisms-is a
disruptive method that has widely been adopted by animal and plant breeders to increase …

Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection

G Gorjanc, RC Gaynor, JM Hickey - Theoretical and applied genetics, 2018 - Springer
Key message Optimal cross selection increases long-term genetic gain of two-part programs
with rapid recurrent genomic selection. It achieves this by optimising efficiency of converting …

Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion

BL Daughtry, JL Rosenkrantz, NH Lazar… - Genome …, 2019 - genome.cshlp.org
Aneuploidy that arises during meiosis and/or mitosis is a major contributor to early embryo
loss. We previously showed that human preimplantation embryos encapsulate …

Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)

C Fraslin, D Robledo, A Kause, RD Houston - Genetics Selection …, 2023 - Springer
Background Flavobacterium columnare is the pathogen agent of columnaris disease, a
major emerging disease that affects rainbow trout aquaculture. Selective breeding using …

Opportunities for improving feed efficiency and spinal health in New Zealand farmed Chinook salmon (Oncorhynchus tshawytscha) using genomic information

M Scholtens, K Dodds, S Walker, S Clarke, M Tate… - Aquaculture, 2023 - Elsevier
Chinook salmon (Oncorhynchus tshawytscha) is an important aquaculture species in New
Zealand and selective breeding since the 1990s has resulted in significant gains in growth …

Genomic prediction using DArT-Seq technology for yellowtail kingfish Seriola lalandi

NH Nguyen, HKA Premachandra, A Kilian, W Knibb - BMC genomics, 2018 - Springer
Abstract Background Genomic prediction using Diversity Arrays Technology (DArT)
genotype by sequencing platform has not been reported in yellowtail kingfish (Seriola …

When less can be better: how can we make genomic selection more cost-effective and accurate in barley?

A Abed, P Pérez-Rodríguez, J Crossa… - Theoretical and Applied …, 2018 - Springer
Key message We were able to obtain good prediction accuracy in genomic selection with~
2000 GBS-derived SNPs. SNPs in genic regions did not improve prediction accuracy …

Optimizing whole-genomic prediction for autotetraploid blueberry breeding

I de Bem Oliveira, RR Amadeu, LFV Ferrão, PR Muñoz - Heredity, 2020 - nature.com
Blueberry (Vaccinium spp.) is an important autopolyploid crop with significant benefits for
human health. Apart from its genetic complexity, the feasibility of genomic prediction has …