Viruses of archaea: structural, functional, environmental and evolutionary genomics

M Krupovic, V Cvirkaite-Krupovic, J Iranzo… - Virus research, 2018 - Elsevier
Viruses of archaea represent one of the most enigmatic parts of the virosphere. Most of the
characterized archaeal viruses infect extremophilic hosts and display remarkable diversity of …

Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere

M Krupovic, D Prangishvili, RW Hendrix… - Microbiology and …, 2011 - Am Soc Microbiol
Prokaryotes, bacteria and archaea, are the most abundant cellular organisms among those
sharing the planet Earth with human beings (among others). However, numerous ecological …

An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity

JS Athukoralage, SA McMahon, C Zhang, S Grüschow… - Nature, 2020 - nature.com
The CRISPR system in bacteria and archaea provides adaptive immunity against mobile
genetic elements. Type III CRISPR systems detect viral RNA, resulting in the activation of …

The wonderful world of archaeal viruses

D Prangishvili - Annual review of microbiology, 2013 - annualreviews.org
This review presents a personal account of research on archaeal viruses and describes
many new viral species and families, demonstrating that viruses of Archaea constitute a …

Dodging the crisis of folding proteins with knots

JI Sulkowska, P Sulkowski, J Onuchic - Biophysical Journal, 2009 - cell.com
We prove that proteins with nontrivial topology, containing knots and slipknots, have the
ability to fold to their native states without any additional external forces invoked. Our studies …

Structural and functional studies of archaeal viruses

CM Lawrence, S Menon, BJ Eilers, B Bothner… - Journal of Biological …, 2009 - ASBMB
Viruses populate virtually every ecosystem on the planet, including the extreme acidic,
thermal, and saline environments where archaeal organisms can dominate. For example …

Identification of rare slipknots in proteins and their implications for stability and folding

NP King, EO Yeates, TO Yeates - Journal of molecular biology, 2007 - Elsevier
Among the thousands of known three-dimensional protein folds, only a few have been found
whose backbones are in knotted configurations. The rarity of knotted proteins has important …

A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes

D Cortez, P Forterre, S Gribaldo - Genome biology, 2009 - Springer
Background Archaeal and bacterial genomes contain a number of genes of foreign origin
that arose from recent horizontal gene transfer, but the role of integrative elements (IEs) …

Archaeal viruses: diversity, replication, and structure

N Dellas, JC Snyder, B Bolduc… - Annual Review of …, 2014 - annualreviews.org
The Archaea—and their viruses—remain the most enigmatic of life's three domains. Once
thought to inhabit only extreme environments, archaea are now known to inhabit diverse …

Mechanically untying a protein slipknot: multiple pathways revealed by force spectroscopy and steered molecular dynamics simulations

C He, GZ Genchev, H Lu, H Li - Journal of the American Chemical …, 2012 - ACS Publications
Protein structure is highly diverse when considering a wide range of protein types, helping to
give rise to the multitude of functions that proteins perform. In particular, certain proteins are …