Mechanisms regulating zygotic genome activation

KN Schulz, MM Harrison - Nature Reviews Genetics, 2019 - nature.com
Following fertilization, the two specified gametes must unite to create an entirely new
organism. The genome is initially transcriptionally quiescent, allowing the zygote to be …

[HTML][HTML] CRISPR-Cas13d induces efficient mRNA knockdown in animal embryos

G Kushawah, L Hernandez-Huertas, JAN Del Prado… - Developmental Cell, 2020 - cell.com
Early embryonic development is driven exclusively by maternal gene products deposited
into the oocyte. Although critical in establishing early developmental programs, maternal …

[HTML][HTML] The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation

L Miao, Y Tang, AR Bonneau, SH Chan, ML Kojima… - Molecular Cell, 2022 - cell.com
Upon fertilization, embryos undergo chromatin reprogramming and genome activation;
however, the mechanisms that regulate these processes are poorly understood. Here, we …

Zebrafish gastrulation: Putting fate in motion

D Pinheiro, CP Heisenberg - Current topics in developmental biology, 2020 - Elsevier
Gastrulation entails specification and formation of three embryonic germ layers—ectoderm,
mesoderm and endoderm—thereby establishing the basis for the future body plan. In …

Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation

M Pálfy, G Schulze, E Valen, NL Vastenhouw - PLoS genetics, 2020 - journals.plos.org
In many organisms, early embryonic development is driven by maternally provided factors
until the controlled onset of transcription during zygotic genome activation. The regulation of …

Zebrafish embryonic explants undergo genetically encoded self-assembly

A Schauer, D Pinheiro, R Hauschild, CP Heisenberg - Elife, 2020 - elifesciences.org
Embryonic stem cell cultures are thought to self-organize into embryoid bodies, able to
undergo symmetry-breaking, germ layer specification and even morphogenesis. Yet, it is …

Pou5f3, SoxB1, and Nanog remodel chromatin on high nucleosome affinity regions at zygotic genome activation

M Veil, LY Yampolsky, B Grüning… - Genome …, 2019 - genome.cshlp.org
The zebrafish embryo is transcriptionally mostly quiescent during the first 10 cell cycles, until
the main wave of zygotic genome activation (ZGA) occurs, accompanied by fast chromatin …

Activator-blocker model of transcriptional regulation by pioneer-like factors

AJ Riesle, M Gao, M Rosenblatt, J Hermes… - Nature …, 2023 - nature.com
Zygotic genome activation (ZGA) in the development of flies, fish, frogs and mammals
depends on pioneer-like transcription factors (TFs). Those TFs create open chromatin …

[HTML][HTML] Extrusion fountains are hallmarks of chromosome organization emerging upon zygotic genome activation

A Galitsyna, SV Ulianov, NS Bykov, M Veil, M Gao… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The first activation of gene expression during development (zygotic genome activation, ZGA)
is accompanied by massive changes in chromosome organization. The connection between …

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

C Nepal, Y Hadzhiev, P Balwierz… - Nature …, 2020 - nature.com
Variations in transcription start site (TSS) selection reflect diversity of preinitiation complexes
and can impact on post-transcriptional RNA fates. Most metazoan polymerase II-transcribed …