[HTML][HTML] A review on trends in development and translation of omics signatures in cancer

W Ma, W Tang, JSL Kwok, AHY Tong, CWS Lo… - Computational and …, 2024 - Elsevier
The field of cancer genomics and transcriptomics has evolved from targeted profiling to swift
sequencing of individual tumor genome and transcriptome. The steady growth in genome …

Application of deep learning in cancer epigenetics through DNA methylation analysis

M Yassi, A Chatterjee, M Parry - Briefings in bioinformatics, 2023 - academic.oup.com
DNA methylation is a fundamental epigenetic modification involved in various biological
processes and diseases. Analysis of DNA methylation data at a genome-wide and high …

Exploring Potential Epigenetic Biomarkers for Colorectal Cancer Metastasis

P Ajithkumar, SS Vasantharajan, S Pattison… - International journal of …, 2024 - mdpi.com
Metastatic progression is a complex, multistep process and the leading cause of cancer
mortality. There is growing evidence that emphasises the significance of epigenetic …

[HTML][HTML] DNA methylation signature of synchronous endometrioid endometrial and ovarian carcinomas

LH Lin, DHR Allison, G Turashvili, V Vasudevaraja… - Modern Pathology, 2023 - Elsevier
Next-generation sequencing (NGS) studies have demonstrated that co-occurring sporadic
endometrioid endometrial carcinoma (EEC) and endometrioid ovarian carcinoma (EOC) are …

DNA methylation biomarker panels for differentiating various liver adenocarcinomas, including hepatocellular carcinoma, cholangiocarcinoma, colorectal liver …

T Draškovič, B Ranković, N Zidar, N Hauptman - Clinical Epigenetics, 2024 - Springer
Background DNA methylation biomarkers are one of the most promising tools for the
diagnosis and differentiation of adenocarcinomas of the liver, which are among the most …

A functional personalised oncology approach against metastatic colorectal cancer in matched patient derived organoids

DKH Thng, L Hooi, BE Siew, KY Lee, IJW Tan… - NPJ Precision …, 2024 - nature.com
Globally, colorectal cancer (CRC) is the third most frequently occurring cancer. Progression
on to an advanced metastatic malignancy (metCRC) is often indicative of poor prognosis, as …

[HTML][HTML] DNA Methylome and Transcriptome Maps of Primary Colorectal Cancer and Matched Liver Metastasis

P Ajithkumar, G Gimenez, PA Stockwell, S Almomani… - Data, 2023 - mdpi.com
Sequencing-based genome-wide DNA methylation, gene expression studies and
associated data on paired colorectal cancer (CRC) primary and liver metastasis are very …

[HTML][HTML] Protocol for generating high-quality genome-scale DNA methylation sequencing data from human cancer biospecimens

EJ Rodger, PA Stockwell, S Almomani, MR Eccles… - STAR protocols, 2023 - Elsevier
Aberrant DNA methylation is a universal feature of cancer. Here, we present a protocol for
generating high-quality genome-scale DNA methylation sequencing data from a variety of …

Targeted DNA Methylation Editing Using an All-in-One System Establishes Paradoxical Activation of EBF3

R Banerjee, P Ajithkumar, N Keestra, J Smith… - Cancers, 2024 - mdpi.com
Simple Summary Contrary to the conventional understanding of DNA hypermethylation
suppressing gene expression, a new mechanism emerges, suggesting that high methylation …

[HTML][HTML] Genome-Scale DNA Methylome and Transcriptome Profiles of Prostate Cancer Recurrence After Prostatectomy

J Smith, P Ajithkumar, EJ Wilkinson, A Dutta… - Data, 2024 - mdpi.com
Prostate cancer (PCa) is a major health burden worldwide, and despite early treatment,
many patients present with biochemical recurrence (BCR) post-treatment, reflected by a rise …