Survey on semi‐tensor product method with its applications in logical networks and other finite‐valued systems

J Lu, H Li, Y Liu, F Li - IET Control Theory & Applications, 2017 - Wiley Online Library
This study presents a detailed survey on recent development of logical networks and its
applications, including the background of logical networks, the theory of a new matrix …

State feedback stabilization for Boolean control networks

R Li, M Yang, T Chu - IEEE Transactions on Automatic Control, 2013 - ieeexplore.ieee.org
State feedback stabilization for Boolean control networks is investigated in this technical
note. Based on the algebraic representation of logical dynamics in terms of the semi-tensor …

[图书][B] Probabilistic Boolean networks: the modeling and control of gene regulatory networks

I Shmulevich, ER Dougherty - 2010 - SIAM
It was around the period of World War II that Arturo Rosenblueth and Norbert Wiener were
taking the first steps in the direction of systems medicine. They formed an interesting pair …

From biological pathways to regulatory networks

RK Layek, A Datta, ER Dougherty - Molecular BioSystems, 2011 - pubs.rsc.org
This paper presents a general theoretical framework for generating Boolean networks
whose state transitions realize a set of given biological pathways or minor variations thereof …

Stochastic Boolean networks: an efficient approach to modeling gene regulatory networks

J Liang, J Han - BMC systems biology, 2012 - Springer
Background Various computational models have been of interest due to their use in the
modelling of gene regulatory networks (GRNs). As a logical model, probabilistic Boolean …

Stationary and structural control in gene regulatory networks: basic concepts

ER Dougherty, R Pal, X Qian, ML Bittner… - International Journal of …, 2010 - Taylor & Francis
A major reason for constructing gene regulatory networks is to use them as models for
determining therapeutic intervention strategies by deriving ways of altering their long-run …

An integer programming approach to optimal control problems in context-sensitive probabilistic Boolean networks

K Kobayashi, K Hiraishi - Automatica, 2011 - Elsevier
A Boolean network is one of the models of biological networks such as gene regulatory
networks, and has been extensively studied. In particular, a probabilistic Boolean network …

Optimal control of gene regulatory networks with effectiveness of multiple drugs: A Boolean network approach

K Kobayashi, K Hiraishi - BioMed research international, 2013 - Wiley Online Library
Developing control theory of gene regulatory networks is one of the significant topics in the
field of systems biology, and it is expected to apply the obtained results to gene therapy …

Stability and stabilisation of context‐sensitive probabilistic Boolean networks

H Chen, J Sun - IET Control Theory & Applications, 2014 - Wiley Online Library
In this study, the authors consider the stability and stabilisation issues of context‐sensitive
probabilistic Boolean networks. Firstly, the algebraic form of the system is obtained by using …

Intervention in gene regulatory networks with maximal phenotype alteration

MR Yousefi, ER Dougherty - Bioinformatics, 2013 - academic.oup.com
Motivation: A basic issue for translational genomics is to model gene interaction via gene
regulatory networks (GRNs) and thereby provide an informatics environment to study the …