Regulation of gene activation by competitive cross talking pathways

F Jiao, C Zhu - Biophysical journal, 2020 - cell.com
The phenomenon of a gene expression burst has been attributed to random transitions
between the active and inactive states of a gene. However, the mechanisms underlying …

A novel approach for calculating exact forms of mRNA distribution in single-cell measurements

J Chen, F Jiao - Mathematics, 2021 - mdpi.com
Gene transcription is a stochastic process manifested by fluctuations in mRNA copy
numbers in individual isogenic cells. Together with mathematical models of stochastic …

Quantification of transcription noise's impact on cell fate commitment with digital resolutions

F Jiao, M Tang - Bioinformatics, 2022 - academic.oup.com
Motivation Gene transcription is a random and noisy process. Tremendous efforts in single-
cell studies have been mapping transcription noises to phenotypic variabilities between …

The nonlinear dynamics and fluctuations of mRNA levels in cell cycle coupled transcription

Q Sun, F Jiao, G Lin, J Yu, M Tang - PLoS Computational Biology, 2019 - journals.plos.org
Gene transcription is a noisy process, and cell division cycle is an important source of gene
transcription noise. In this work, we develop a mathematical approach by coupling …

The nonlinear dynamics and fluctuations of mRNA levels in cross-talking pathway activated transcription

J Yu, Q Sun, M Tang - Journal of Theoretical Biology, 2014 - Elsevier
Gene transcription is a stochastic process, and is often activated by multiple signal
transduction pathways. In this work, we study gene transcription activated randomly by two …

Distribution profiles and their dynamic transition in stochastic gene transcription

F Jiao, M Tang, J Yu - Journal of Differential Equations, 2013 - Elsevier
Gene transcription is a central process in life. In single cells, it is a random process since
many regulatory molecules are present at low copy numbers. The randomness is best …

Fluctuations of mRNA distributions in multiple pathway activated transcription.

G Lin, J Yu, Z Zhou, Q Sun… - Discrete & Continuous …, 2019 - search.ebscohost.com
Randomness in gene transcription can result in fluctuations (noise) of messenger RNA
(mRNA) levels, leading to phenotypic plasticity in the isogenic populations of cells. Recent …

The dynamics of gene transcription with a periodic synthesis rate

Q Sun, F Jiao, J Yu - Nonlinear Dynamics, 2021 - Springer
The periodic transcription output is ubiquitously observed in an isogenic cell population. To
understand mechanisms of cyclic behavior in transcription, we extend the gene activation …

The mean and noise of stochastic gene transcription with cell division

Q Wang, L Huang, K Wen, J Yu - Mathematical Biosciences & …, 2018 - aimsciences.org
Life growth and development are driven by continuous cell divisions. Cell division is a
stochastic and complex process. In this paper, we study the impact of cell division on the …

The mean and noise of protein numbers in stochastic gene expression

J Kuang, M Tang, J Yu - Journal of mathematical biology, 2013 - Springer
Gene expression is the central process in cells, and is stochastic in nature. In this work, we
study the mean expression level of, and the expression noise in, a population of isogenic …