Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits

E Biazzi, N Nazzicari, L Pecetti, EC Brummer… - PloS one, 2017 - journals.plos.org
Genetic progress for forage quality has been poor in alfalfa (Medicago sativa L.), the most-
grown forage legume worldwide. This study aimed at exploring opportunities for marker …

Genetic Diversity, Population Structure, and Linkage Disequilibrium of a Core Collection of Ziziphus jujuba Assessed with Genome-wide SNPs Developed by …

W Chen, L Hou, Z Zhang, X Pang, Y Li - Frontiers in plant science, 2017 - frontiersin.org
Chinese jujube (Ziziphus jujuba Mill) is an economically important fruit species native to
China with high nutritious and medicinal value. Genotyping-by-sequencing was used to …

Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing

S McCallum, J Graham, L Jorgensen, LJ Rowland… - Molecular …, 2016 - Springer
The construction of the first genetic map in autotetraploid blueberry has been made possible
by the development of new SNP markers developed using genotyping by sequencing in a …

Marker imputation efficiency for genotyping-by-sequencing data in rice (Oryza sativa) and alfalfa (Medicago sativa)

N Nazzicari, F Biscarini, P Cozzi, EC Brummer… - Molecular …, 2016 - Springer
Abstract Genotyping-by-sequencing (GBS) is a rapid and cost-effective genome-wide
genotyping technique applicable whether a reference genome is available or not. Due to the …

Transcriptomics and metabolomics revealed that phosphate improves the cold tolerance of alfalfa

Y Wang, Z Sun, Q Wang, J Xie, L Yu - Frontiers in Plant Science, 2023 - frontiersin.org
Introduction Alfalfa (Medicago sativa L.) is a highly nutritious leguminous forage that plays
an essential role in animal husbandry. In the middle and high latitudes of the northern …

Assessment of genetic diversity and population structure in local alfalfa genotypes using iPBS molecular markers

B Eren, B Keskin, F Demirel, S Demirel… - Genetic Resources and …, 2023 - Springer
Abstract iPBS retrotransposon markers, in other words, inter-primer binding site markers
based on retrotransposon, have been helpful for the determination of genetic diversity in …

Individual-based dendrogenomic analysis of forest dieback driven by extreme droughts

M Fasanella, ML Suarez, R Hasbún… - Canadian Journal of …, 2021 - cdnsciencepub.com
Droughts driven by global change are triggering worldwide forest dieback, a phenomenon
that is predicted to worsen. We combined genome-wide single nucleotide polymorphisms …

Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus

D Ahmed, A Comte, F Curk, G Costantino… - Annals of …, 2019 - academic.oup.com
Abstract Background and Aims Reticulate evolution, coupled with reproductive features
limiting further interspecific recombinations, results in admixed mosaics of large genomic …

Genome-wide association studies identifying multiple loci associated with alfalfa forage quality

S Lin, CA Medina, OS Norberg, D Combs… - Frontiers in Plant …, 2021 - frontiersin.org
Autotetraploid alfalfa is a major hay crop planted all over the world due to its adaptation in
different environments and high quality for animal feed. However, the genetic basis of alfalfa …

Phased genotyping-by-sequencing enhances analysis of genetic diversity and reveals divergent copy number variants in maize

H Manching, S Sengupta, KR Hopper… - G3: Genes …, 2017 - academic.oup.com
High-throughput sequencing (HTS) of reduced representation genomic libraries has
ushered in an era of genotyping-by-sequencing (GBS), where genome-wide genotype data …