Pharmacophore-based virtual screening

D Horvath - Chemoinformatics and computational chemical biology, 2011 - Springer
This chapter is a review of the most recent developments in the field of pharmacophore
modeling, covering both methodology and application. Pharmacophore-based virtual …

Evolving molecules using multi-objective optimization: applying to ADME/Tox

S Ekins, JD Honeycutt, JT Metz - Drug discovery today, 2010 - Elsevier
Modern drug discovery involves the simultaneous optimization of many physicochemical
and biological properties that transcends the historical focus on bioactivity alone. The …

Generating conformer ensembles using a multiobjective genetic algorithm

MJ Vainio, MS Johnson - Journal of chemical information and …, 2007 - ACS Publications
The task of generating a nonredundant set of low-energy conformations for small molecules
is of fundamental importance for many molecular modeling and drug-design methodologies …

[PDF][PDF] Molecular optimization using computational multi-objective methods

CA Nicolaou, N Brown, CS Pattichis - Current Opinion in Drug …, 2007 - academia.edu
Improving the profile of a molecule for the drug-discovery process requires the simultaneous
optimization of numerous, often competing objectives. Traditionally, standard …

Identification of bioactive natural products by pharmacophore-based virtual screening

D Schuster, G Wolber - Current pharmaceutical design, 2010 - ingentaconnect.com
Natural products have been exposed to a long selection process to interact with biological
targets and are therefore a valuable source for ideas for novel chemical entities in drug …

Cyndi: a multi-objective evolution algorithm based method for bioactive molecular conformational generation

X Liu, F Bai, S Ouyang, X Wang, H Li, H Jiang - BMC bioinformatics, 2009 - Springer
Background Conformation generation is a ubiquitous problem in molecule modelling. Many
applications require sampling the broad molecular conformational space or perceiving the …

Strategies of multi-objective optimization in drug discovery and development

O Nicolotti, I Giangreco, A Introcaso… - Expert opinion on …, 2011 - Taylor & Francis
Introduction: Drug discovery and development is a typical multi-objective problem and its
successes or failures depend on the simultaneous control of numerous, often conflicting …

Improving quantitative structure− activity relationships through multiobjective optimization

O Nicolotti, I Giangreco, TF Miscioscia… - Journal of chemical …, 2009 - ACS Publications
A multiobjective optimization algorithm was proposed for the automated integration of
structure-and ligand-based molecular design. Driven by a genetic algorithm, the herein …

pharmACOphore: multiple flexible ligand alignment based on ant colony optimization

O Korb, P Monecke, G Hessler, T Stutzle… - Journal of chemical …, 2010 - ACS Publications
The flexible superimposition of biologically active ligands is a crucial step in ligand-based
drug design. Here we present pharmACOphore, a new approach for pairwise as well as …

[图书][B] Bioactive compounds from natural sources: Natural products as lead compounds in drug discovery

C Tringali - 2011 - books.google.com
This book focuses on the modern approach to the isolation of biologically active natural
products and provides numerous examples of the isolation and characterization of …