Ice-binding proteins and their function

M Bar Dolev, I Braslavsky… - Annual review of …, 2016 - annualreviews.org
Ice-binding proteins (IBPs) are a diverse class of proteins that assist organism survival in the
presence of ice in cold climates. They have different origins in many organisms, including …

The properties, biotechnologies, and applications of antifreeze proteins

H Xiang, X Yang, L Ke, Y Hu - International journal of biological …, 2020 - Elsevier
By natural selection, organisms evolve different solutions to cope with extremely cold
weather. The emergence of an antifreeze protein gene is one of the most momentous …

Multistate and functional protein design using RoseTTAFold sequence space diffusion

SL Lisanza, JM Gershon, SWK Tipps, JN Sims… - Nature …, 2024 - nature.com
Protein denoising diffusion probabilistic models are used for the de novo generation of
protein backbones but are limited in their ability to guide generation of proteins with …

Structural analysis and architectural principles of the bacterial amyloid curli

M Sleutel, B Pradhan, AN Volkov, H Remaut - Nature Communications, 2023 - nature.com
Two decades have passed since the initial proposition that amyloids are not only (toxic)
byproducts of an unintended aggregation cascade, but that they can also be produced by an …

Joint generation of protein sequence and structure with RoseTTAFold sequence space diffusion

SL Lisanza, JM Gershon, S Tipps, L Arnoldt, S Hendel… - bioRxiv, 2023 - biorxiv.org
Protein denoising diffusion probabilistic models (DDPMs) show great promise in the de novo
generation of protein backbones but are limited in their inability to guide generation of …

A self-consistent sonification method to translate amino acid sequences into musical compositions and application in protein design using artificial intelligence

CH Yu, Z Qin, FJ Martin-Martinez, MJ Buehler - ACS nano, 2019 - ACS Publications
We report a self-consistent method to translate amino acid sequences into audible sound,
use the representation in the musical space to train a neural network, and then apply it to …

General principles underpinning amyloid structure

AIP Taylor, RA Staniforth - Frontiers in Neuroscience, 2022 - frontiersin.org
Amyloid fibrils are a pathologically and functionally relevant state of protein folding, which is
generally accessible to polypeptide chains and differs fundamentally from the globular state …

Harnessing self-assembled peptide nanoparticles in epitope vaccine design

M Negahdaripour, N Golkar, N Hajighahramani… - Biotechnology …, 2017 - Elsevier
Vaccination has been one of the most successful breakthroughs in medical history. In recent
years, epitope-based subunit vaccines have been introduced as a safer alternative to …

Water-organizing motif continuity is critical for potent ice nucleation protein activity

J Forbes, A Bissoyi, L Eickhoff, N Reicher… - Nature …, 2022 - nature.com
Bacterial ice nucleation proteins (INPs) can cause frost damage to plants by nucleating ice
formation at high sub-zero temperatures. Modeling of Pseudomonas borealis INP by …

[HTML][HTML] Self-assembling peptide biomaterials: Insights from spontaneous and enhanced sampling molecular dynamics simulations

BJ Williams-Noonan, A Kamboukos… - Chemical Physics …, 2023 - pubs.aip.org
Peptide self-assembly is the process by which peptide molecules aggregate into low
dimensional (1D, 2D) or 3D ordered materials with potential applications ranging from drug …