HTRA proteases: regulated proteolysis in protein quality control

T Clausen, M Kaiser, R Huber… - Nature reviews Molecular …, 2011 - nature.com
Controlled proteolysis underlies a vast diversity of protective and regulatory processes that
are of key importance to cell fate. The unique molecular architecture of the widely conserved …

Short linear motifs – ex nihilo evolution of protein regulation

NE Davey, MS Cyert, AM Moses - Cell Communication and Signaling, 2015 - Springer
Short sequence motifs are ubiquitous across the three major types of biomolecules:
hundreds of classes and thousands of instances of DNA regulatory elements, RNA motifs …

A molecular code for endosomal recycling of phosphorylated cargos by the SNX27–retromer complex

T Clairfeuille, C Mas, ASM Chan, Z Yang… - Nature structural & …, 2016 - nature.com
Recycling of internalized receptors from endosomal compartments is essential for the
receptors' cell-surface homeostasis. Sorting nexin 27 (SNX27) cooperates with the retromer …

Sequence evolution correlates with structural dynamics

Y Liu, I Bahar - Molecular biology and evolution, 2012 - academic.oup.com
Biochemical activity and core stability are essential properties of proteins, maintained
usually by conserved amino acids. Structural dynamics emerged in recent years as another …

[HTML][HTML] Specificity in PDZ-peptide interaction networks: Computational analysis and review

JF Amacher, L Brooks 3rd, TH Hampton… - Journal of Structural …, 2020 - Elsevier
Globular PDZ domains typically serve as protein–protein interaction modules that regulate a
wide variety of cellular functions via recognition of short linear motifs (SLiMs). Often, PDZ …

Tertiary alphabet for the observable protein structural universe

CO Mackenzie, J Zhou… - Proceedings of the …, 2016 - National Acad Sciences
Here, we systematically decompose the known protein structural universe into its basic
elements, which we dub tertiary structural motifs (TERMs). A TERM is a compact backbone …

Physiology and evolution of voltage-gated calcium channels in early diverging animal phyla: Cnidaria, Placozoa, Porifera and Ctenophora

A Senatore, H Raiss, P Le - Frontiers in physiology, 2016 - frontiersin.org
Voltage-gated calcium (Cav) channels serve dual roles in the cell, where they can both
depolarize the membrane potential for electrical excitability, and activate transient …

[HTML][HTML] Site-1 and site-2 proteases: a team of two in regulated proteolysis

T Danyukova, K Schöneck, S Pohl - Biochimica et Biophysica Acta (BBA) …, 2022 - Elsevier
Abstract The site-1 and site-2 proteases (S1P and S2P) were identified over 20 years ago,
and the functions of both have been addressed in numerous studies ever since. Whereas …

Evolutionary origin of synapses and neurons–Bridging the gap

P Burkhardt, SG Sprecher - Bioessays, 2017 - Wiley Online Library
The evolutionary origin of synapses and neurons is an enigmatic subject that inspires much
debate. Non‐bilaterian metazoans, both with and without neurons and their closest relatives …

Functionalization of a protosynaptic gene expression network

C Conaco, DS Bassett, H Zhou… - Proceedings of the …, 2012 - National Acad Sciences
Assembly of a functioning neuronal synapse requires the precisely coordinated synthesis of
many proteins. To understand the evolution of this complex cellular machine, we tracked the …