Redefining tumor-associated macrophage subpopulations and functions in the tumor microenvironment

K Wu, K Lin, X Li, X Yuan, P Xu, P Ni, D Xu - Frontiers in immunology, 2020 - frontiersin.org
The immunosuppressive status of the tumor microenvironment (TME) remains poorly
defined due to a lack of understanding regarding the function of tumor-associated …

[HTML][HTML] Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges

M Cheng, Y Jiang, J Xu, AFA Mentis, S Wang… - Journal of Genetics and …, 2023 - Elsevier
The ability to explore life kingdoms is largely driven by innovations and breakthroughs in
technology, from the invention of the microscope 350 years ago to the recent emergence of …

[HTML][HTML] Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma

AL Ji, AJ Rubin, K Thrane, S Jiang, DL Reynolds… - Cell, 2020 - cell.com
To define the cellular composition and architecture of cutaneous squamous cell carcinoma
(cSCC), we combined single-cell RNA sequencing with spatial transcriptomics and …

High-definition spatial transcriptomics for in situ tissue profiling

S Vickovic, G Eraslan, F Salmén, J Klughammer… - Nature …, 2019 - nature.com
Spatial and molecular characteristics determine tissue function, yet high-resolution methods
to capture both concurrently are lacking. Here, we developed high-definition spatial …

Identification of early neurodegenerative pathways in progressive multiple sclerosis

M Kaufmann, AL Schaupp, R Sun, F Coscia… - Nature …, 2022 - nature.com
Progressive multiple sclerosis (MS) is characterized by unrelenting neurodegeneration,
which causes cumulative disability and is refractory to current treatments. Drug development …

Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver

F Hildebrandt, A Andersson, S Saarenpää… - Nature …, 2021 - nature.com
Reconstruction of heterogeneity through single cell transcriptional profiling has greatly
advanced our understanding of the spatial liver transcriptome in recent years. However …

SM-Omics is an automated platform for high-throughput spatial multi-omics

S Vickovic, B Lötstedt, J Klughammer, S Mages… - Nature …, 2022 - nature.com
The spatial organization of cells and molecules plays a key role in tissue function in
homeostasis and disease. Spatial transcriptomics has recently emerged as a key technique …

Single-cell transcriptomics: current methods and challenges in data acquisition and analysis

A Adil, V Kumar, AT Jan, M Asger - Frontiers in Neuroscience, 2021 - frontiersin.org
Rapid cost drops and advancements in next-generation sequencing have made profiling of
cells at individual level a conventional practice in scientific laboratories worldwide. Single …

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections

F Salmén, PL Ståhl, A Mollbrink, JF Navarro… - Nature protocols, 2018 - nature.com
Spatial resolution of gene expression enables gene expression events to be pinpointed to a
specific location in biological tissue. Spatially resolved gene expression in tissue sections is …

Identifying CNS-colonizing T cells as potential therapeutic targets to prevent progression of multiple sclerosis

M Kaufmann, H Evans, AL Schaupp, JB Engler, G Kaur… - Med, 2021 - cell.com
Background Multiple sclerosis (MS), an autoimmune disease of the central nervous system
(CNS), can be suppressed in its early stages but eventually becomes clinically progressive …