In order to understand the functioning of organisms on the molecular level, we need to know
which genes are expressed, when and where in the organism, and to which extent. The …

Microarray chips generate large amounts of data about a cell's state. In our work we want to
analyze these data in order to describe the regulation processes within a cell. Therefore, we …

Synthetic biology is a recently emerging field that applies engineering formalisms to design
and construct new biological parts, devices, and systems for novel functions or life forms that …

Global level analyses of biological systems require the integration and interoperation of
various biological models. Such integration and interoperation are usually achieved using …

Rate Distortion Manifolds as Model Spaces for Cognitive Information 1 Introduction Page 1
Informatica 33 (2009) 309–345 309 Rate Distortion Manifolds as Model Spaces for …

Gene regulatory networks describe how cells control the expression of genes, which,
together with some additional regulation further downstream, determines the production of …

Background The reconstruction of gene regulatory networks from time series gene
expression data is one of the most difficult problems in systems biology. This is due to …

Computer modeling and simulation are indispensable for understanding the functioning of
an organism on a molecular level. We present an implemented method for the qualitative …

The aim of this paper is to give an overview of computer modelling and simulation in cellular
biology, in particular as applied to complex biochemical processes within the cell. This is …

A categorical, higher dimensional algebra and generalized topos framework for Łukasiewicz–
Moisil Algebraic–Logic models of non-linear dynamics in complex functional genomes and …