Miniaturized integration of a fluorescence microscope

KK Ghosh, LD Burns, ED Cocker, A Nimmerjahn… - Nature …, 2011 - nature.com
The light microscope is traditionally an instrument of substantial size and expense. Its
miniaturized integration would enable many new applications based on mass-producible …

OpenCFU, a new free and open-source software to count cell colonies and other circular objects

Q Geissmann - PloS one, 2013 - journals.plos.org
Counting circular objects such as cell colonies is an important source of information for
biologists. Although this task is often time-consuming and subjective, it is still predominantly …

High-throughput methods to define complex stem cell niches

S Kobel, MP Lutolf - Biotechniques, 2010 - Taylor & Francis
The potential of stem cells in clinics and as a diagnostic tool is still largely unmet, partially
due to a lack of in vitro models that efficiently mimic the in vivo stem cell microenvironment …

Prediction of drug permeation through microneedled skin by machine learning

Y Yuan, Y Han, CW Yap, JS Kochhar… - Bioengineering & …, 2023 - Wiley Online Library
Stratum corneum is the outermost layer of the skin preventing external substances from
entering human body. Microneedles (MNs) are sharp protrusions of a few hundred microns …

Automated cell counting for Trypan blue-stained cell cultures using machine learning

L Kuijpers, E van Veen, LA van der Pol, NH Dekker - Plos one, 2023 - journals.plos.org
Cell counting is a vital practice in the maintenance and manipulation of cell cultures. It is a
crucial aspect of assessing cell viability and determining proliferation rates, which are …

FluoroCellTrack: An algorithm for automated analysis of high-throughput droplet microfluidic data

M Vaithiyanathan, N Safa, AT Melvin - PloS one, 2019 - journals.plos.org
High-throughput droplet microfluidic devices with fluorescence detection systems provide
several advantages over conventional end-point cytometric techniques due to their ability to …

Automated analysis of single stem cells in microfluidic traps

SA Kobel, O Burri, A Griffa, M Girotra, A Seitz… - Lab on a Chip, 2012 - pubs.rsc.org
We report a reliable strategy to perform automated image cytometry of single (non-adherent)
stem cells captured in microfluidic traps. The method rapidly segments images of an entire …

Effects of a single intravitreal injection of aflibercept and ranibizumab on glomeruli of monkeys

A Tschulakow, S Christner, S Julien, M Ludinsky… - PLoS …, 2014 - journals.plos.org
Purpose It is known that endothelial cells in the kidney are also strongly VEGF-dependent.
Whether intravitreal drugs can be detected within the glomeruli or affect VEGF in glomerular …

A semi-automated technique for labeling and counting of apoptosing retinal cells

M Bizrah, SC Dakin, L Guo, F Rahman, M Parnell… - BMC …, 2014 - Springer
Background Retinal ganglion cell (RGC) loss is one of the earliest and most important
cellular changes in glaucoma. The DARC (Detection of Apoptosing Retinal Cells) …

Comparison of two automatic cell‐counting solutions for fluorescent microscopic images

J Lojk, U Čibej, D Karlaš, L Šajn… - Journal of …, 2015 - Wiley Online Library
Cell counting in microscopic images is one of the fundamental analysis tools in life sciences,
but is usually tedious, time consuming and prone to human error. Several programs for …