[HTML][HTML] Tools to investigate the ubiquitin proteasome system

Y Leestemaker, H Ovaa - Drug Discovery Today: Technologies, 2017 - Elsevier
Ubiquitin is a 76-amino acid regulatory protein involved in many important cellular
processes. Ubiquitin can be attached to other proteins at either a lysine residue or to the N …

Synthetic gene circuits as tools for drug discovery

AM Beitz, CG Oakes, KE Galloway - Trends in Biotechnology, 2022 - cell.com
Within mammalian systems, there exists enormous opportunity to use synthetic gene circuits
to enhance phenotype-based drug discovery, to map the molecular origins of disease, and …

Post-translational control of genetic circuits using Potyvirus proteases

J Fernandez-Rodriguez, CA Voigt - Nucleic acids research, 2016 - academic.oup.com
Genetic engineering projects often require control over when a protein is degraded. To this
end, we use a fusion between a degron and an inactivating peptide that can be added to the …

Systematic transfer of prokaryotic sensors and circuits to mammalian cells

BC Stanton, V Siciliano, A Ghodasara… - ACS synthetic …, 2014 - ACS Publications
Prokaryotic regulatory proteins respond to diverse signals and represent a rich resource for
building synthetic sensors and circuits. The TetR family contains> 105 members that use a …

Highlighting the proteasome: Using fluorescence to visualize proteasome activity and distribution

J Gan, Y Leestemaker, A Sapmaz… - Frontiers in Molecular …, 2019 - frontiersin.org
Proteasomes are critical proteases in the cell responsible for the turnover of many
cytoplasmic and nuclear proteins. They are essential for many cellular processes and …

Parkin protects against oxygen‐glucose deprivation/reperfusion insult by promoting Drp1 degradation

J Tang, Z Hu, J Tan, S Yang… - Oxidative medicine and …, 2016 - Wiley Online Library
Ischemic stroke results in severe brain damage and remains one of the leading causes of
death and disability worldwide. Effective neuroprotective therapies are needed to reduce …

Quantitatively predictable control of cellular protein levels through proteasomal degradation

W Zhao, L Pferdehirt, L Segatori - ACS Synthetic Biology, 2018 - ACS Publications
Protein function is typically studied and engineered by modulating protein levels within the
complex cellular environment. To achieve fast, targeted, and predictable control of cellular …

Alzheimer's as a systems-level disease involving the interplay of multiple cellular networks

JI Castrillo, SG Oliver - Systems Biology of Alzheimer's Disease, 2016 - Springer
Abstract Alzheimer's disease (AD), and many neurodegenerative disorders, are
multifactorial in nature. They involve a combination of genomic, epigenomic, interactomic …

Optogenetic downregulation of protein levels with an ultrasensitive switch

S Hasenjäger, J Trauth, S Hepp, J Goenrich… - ACS Synthetic …, 2019 - ACS Publications
Optogenetic control of protein activity is a versatile technique to gain control over cellular
processes, for example, for biomedical and biotechnological applications. Among other …

[HTML][HTML] A brief overview to systems biology in toxicology: the journey from in to vivo, in-vitro and–omics

FA Yahya, NFM Hashim, DAI Ali, TC Ling… - Journal of King Saud …, 2021 - Elsevier
Toxicology aims to comprehend and envisage the adverse outcomes of chemicals and
xenobiotics on the biological system. Predicting toxicity on the biological system is a …