QSAR without borders

EN Muratov, J Bajorath, RP Sheridan… - Chemical Society …, 2020 - pubs.rsc.org
Prediction of chemical bioactivity and physical properties has been one of the most
important applications of statistical and more recently, machine learning and artificial …

QSAR-based virtual screening: advances and applications in drug discovery

BJ Neves, RC Braga, CC Melo-Filho… - Frontiers in …, 2018 - frontiersin.org
Virtual screening (VS) has emerged in drug discovery as a powerful computational
approach to screen large libraries of small molecules for new hits with desired properties …

Exploring G protein-coupled receptors (GPCRs) ligand space via cheminformatics approaches: impact on rational drug design

S Basith, M Cui, SJY Macalino, J Park… - Frontiers in …, 2018 - frontiersin.org
The primary goal of rational drug discovery is the identification of selective ligands which act
on single or multiple drug targets to achieve the desired clinical outcome through the …

[HTML][HTML] DTITR: End-to-end drug–target binding affinity prediction with transformers

NRC Monteiro, JL Oliveira, JP Arrais - Computers in Biology and Medicine, 2022 - Elsevier
The accurate identification of Drug–Target Interactions (DTIs) remains a critical turning point
in drug discovery and understanding of the binding process. Despite recent advances in …

The role and potential of computer-aided drug discovery strategies in the discovery of novel antimicrobials

SO Oselusi, P Dube, AI Odugbemi, KA Akinyede… - Computers in biology …, 2024 - Elsevier
Antimicrobial resistance (AMR) has become more of a concern in recent decades,
particularly in infections associated with global public health threats. The development of …

MCANet: shared-weight-based MultiheadCrossAttention network for drug–target interaction prediction

J Bian, X Zhang, X Zhang, D Xu… - Briefings in …, 2023 - academic.oup.com
Accurate and effective drug–target interaction (DTI) prediction can greatly shorten the drug
development lifecycle and reduce the cost of drug development. In the deep-learning-based …

Data-driven quantitative structure–activity relationship modeling for human carcinogenicity by chronic oral exposure

E Chung, DP Russo, HL Ciallella… - Environmental …, 2023 - ACS Publications
Traditional methodologies for assessing chemical toxicity are expensive and time-
consuming. Computational modeling approaches have emerged as low-cost alternatives …

Artificial intelligence and machine-learning approaches in structure and ligand-based discovery of drugs affecting central nervous system

V Gautam, A Gaurav, N Masand, VS Lee, VM Patil - Molecular Diversity, 2023 - Springer
CNS disorders are indications with a very high unmet medical needs, relatively smaller
number of available drugs, and a subpar satisfaction level among patients and caregiver …

[HTML][HTML] TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers

NRC Monteiro, JL Oliveira, JP Arrais - Expert Systems with Applications, 2024 - Elsevier
The proper assessment of target-specific compound selectivity is paramount in the drug
discovery context, promoting the identification of drug-target interactions (DTIs) and the …

Predicting fluorescence to singlet oxygen generation quantum yield ratio for BODIPY dyes using QSPR and machine learning

PP Chebotaev, AA Buglak, A Sheehan… - Physical Chemistry …, 2024 - pubs.rsc.org
Functional dyes that are capable of both bright fluorescence and efficient singlet oxygen
generation are crucial for theranostic techniques, which integrate fluorescence imaging and …