Metagenomics: An effective approach for exploring microbial diversity and functions

NN Nam, HDK Do, KT Loan Trinh, NY Lee - Foods, 2023 - mdpi.com
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

Potential of meta-omics to provide modern microbial indicators for monitoring soil quality and securing food production

C Djemiel, S Dequiedt, B Karimi, A Cottin… - Frontiers in …, 2022 - frontiersin.org
Soils are fundamental resources for agricultural production and play an essential role in
food security. They represent the keystone of the food value chain because they harbor a …

[HTML][HTML] Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome

N Carlino, A Blanco-Míguez, M Punčochář, C Mengoni… - Cell, 2024 - cell.com
Complex microbiomes are part of the food we eat and influence our own microbiome, but
their diversity remains largely unexplored. Here, we generated the open access …

Quorum sensing in human gut and food microbiomes: Significance and potential for therapeutic targeting

AK Falà, A Álvarez-Ordóñez, A Filloux… - Frontiers in …, 2022 - frontiersin.org
Human gut and food microbiomes interact during digestion. The outcome of these
interactions influences the taxonomical composition and functional capacity of the resident …

[HTML][HTML] Determination and quantification of microbial communities and antimicrobial resistance on food through host DNA-depleted metagenomics

SJ Bloomfield, AL Zomer, J O'grady, GL Kay, J Wain… - Food …, 2023 - Elsevier
Food products carry bacteria unless specifically sterilised. These bacteria can be
pathogenic, commensal or associated with food spoilage, and may also be resistant to …

Metagenomics and metagenome-assembled genomes mining of health benefits in jalebi batter, a naturally fermented cereal-based food of India

HNJ Shangpliang, JP Tamang - Food Research International, 2023 - Elsevier
Jalebi is one of the oldest Indian traditional fermented wheat-based confectioneries. Since
jalebi is prepared by natural fermentation, diverse microbial community is expected to play …

Improved sampling and DNA extraction procedures for microbiome analysis in food-processing environments

C Barcenilla, JF Cobo-Díaz, F De Filippis… - Nature …, 2024 - nature.com
Deep investigation of the microbiome of food-production and food-processing environments
through whole-metagenome sequencing (WMS) can provide detailed information on the …

Recent and advanced DNA-based technologies for the authentication of probiotic, protected designation of origin (PDO) and protected geographical indication (PGI) …

V Fusco, F Fanelli, D Chieffi - Foods, 2023 - mdpi.com
The authenticity of probiotic products and fermented foods and beverages that have the
status of protected designation of origin (PDO) or geographical indication (PGI) can be …

Microbial valorization of kraft black liquor for production of platform chemicals, biofuels, and value-added products: A critical review

V Kumar, P Verma - Journal of Environmental Management, 2024 - Elsevier
The proper treatment and utilization of kraft black liquor, generated from the pulp and paper
industry through the kraft pulping method, is required to reduce environmental impacts prior …

Multi-omic data integration in food science and analysis

S Herráiz-Gil, MC de Arriba, MJ Escámez… - Current Opinion in Food …, 2023 - Elsevier
The integration of multi-omics data allows the comprehensive analysis at the molecular level
of complex matrixes, such as those from food, or health and disease status, from a holistic …