Molecular biologist's guide to proteomics

PR Graves, TAJ Haystead - Microbiology and molecular biology …, 2002 - Am Soc Microbiol
The emergence of proteomics, the large-scale analysis of proteins, has been inspired by the
realization that the final product of a gene is inherently more complex and closer to function …

Genome annotation: from sequence to biology

L Stein - Nature reviews genetics, 2001 - nature.com
The genome sequence of an organism is an information resource unlike any that biologists
have previously had access to. But the value of the genome is only as good as its …

Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry

H Zhang, X Li, DB Martin, R Aebersold - Nature biotechnology, 2003 - nature.com
Quantitative proteome profiling using stable isotope protein tagging and automated tandem
mass spectrometry (MS/MS) is an emerging technology with great potential for the functional …

A novel MALDI LIFT-TOF/TOF mass spectrometer for proteomics

D Suckau, A Resemann, M Schuerenberg… - Analytical and …, 2003 - Springer
A new matrix-assisted laser-desorption/ionization time-of-flight/time-of-flight mass
spectrometer with the novel" LIFT" technique (MALDI LIFT-TOF/TOF MS) is described. This …

Quantitative proteomic analysis by accurate mass retention time pairs

JC Silva, R Denny, CA Dorschel, M Gorenstein… - Analytical …, 2005 - ACS Publications
Current methodologies for protein quantitation include 2-dimensional gel electrophoresis
techniques, metabolic labeling, and stable isotope labeling methods to name only a few …

Complementary profiling of gene expression at the transcriptome and proteome levels in saccharomyces cerevisiae* S

TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng… - Molecular & Cellular …, 2002 - ASBMB
Using an integrated genomic and proteomic approach, we have investigated the effects of
carbon source perturbation on steady-state gene expression in the yeast Saccharomyces …

Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry

D Chelius, PV Bondarenko - Journal of proteome research, 2002 - ACS Publications
The objective of this study was to determine if liquid chromatography mass spectrometry
(LC/MS) data of tryptic digests of proteins can be used for quantitation. In theory, the peak …

Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography− tandem mass …

PV Bondarenko, D Chelius, TA Shaler - Analytical chemistry, 2002 - ACS Publications
In this report, we describe an approach for identification and relative quantitation of
individual proteins within mixtures using LC/MS/MS analysis of protein digests. First, the …

A novel strategy for quantitative proteomics using isotope‐coded protein labels

A Schmidt, J Kellermann, F Lottspeich - Proteomics, 2005 - Wiley Online Library
Stable isotope labelling in combination with mass spectrometry has emerged as a powerful
tool to identify and relatively quantify thousands of proteins within complex protein mixtures …

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry in clinical chemistry

LF Marvin, MA Roberts, LB Fay - Clinica chimica acta, 2003 - Elsevier
Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-Tof-MS)
has recently become a popular and versatile method to analyze macromolecules from …