Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species

C Guyeux, JC Charr, HTM Tran, A Furtado, RJ Henry… - PLoS …, 2019 - journals.plos.org
Chloroplast sequences are widely used for phylogenetic analysis due to their high degree of
conservation in plants. Whole chloroplast genomes can now be readily obtained for plant …

Relation between gene content and taxonomy in chloroplasts

B Al-Nuaimi, C Guyeux, B AlKindy, JF Couchot… - arXiv preprint arXiv …, 2016 - arxiv.org
The aim of this study is to investigate the relation that can be found between the phylogeny
of a large set of complete chloroplast genomes, and the evolution of gene content inside …

Ancestral reconstruction and investigations of genomic recombination on some pentapetalae chloroplasts

C Guyeux, M Salomon, B Al-Nuaimi… - Journal of Integrative …, 2019 - degruyter.com
In this article, we propose a semi-automated method to rebuild genome ancestors of
chloroplasts by taking into account gene duplication. Two methods have been used in order …

Taenia biomolecular phylogeny and the impact of mitochondrial genes on this latter

H Al-Nayyef, C Guyeux, JM Bahi - 2015 IEEE Conference on …, 2015 - ieeexplore.ieee.org
Variations in mitochondrial genes are usually considered to infer phylogenies. However
some of these genes are lesser constraint than other ones, and thus may blur the …

Comparison of metaheuristics to measure gene effects on phylogenetic supports and topologies

R Garnier, C Guyeux, JF Couchot, M Salomon… - BMC …, 2018 - Springer
Background A huge and continuous increase in the number of completely sequenced
chloroplast genomes, available for evolutionary and functional studies in plants, has been …

Ancestral Reconstruction and Investigations of Genomics Recombination on Chloroplasts Genomes

B Al-Nuaimi - 2017 - theses.hal.science
The theory of evolution is based on modern biology. All new species emerge of an existing
species. As a result, different species share common ancestry, as represented in the …

Combining approaches for predicting genomic evolution

B Alkindy - 2015 - theses.hal.science
In Bioinformatics, understanding how DNA molecules have evolved over time remains an
open and complex problem. Algorithms have been proposed to solve this problem, but they …

[PDF][PDF] Relation between Gene Content and Taxonomy in Chloroplasts

F Franche-Comté - academia.edu
The aim of this study is to investigate the relation that can be found between the phylogeny
of a large set of complete chloroplast genomes, and the evolution of gene content inside …

Investigating the Impact of Insertion Sequences on the Evolution of Prokaryotic Genomes

H Al-Nayyef - 2015 - theses.fr
Le nombre de génomes bactériens et archées complètement séquencés augmentant sans
cesse plus, une telle augmentation rend possible le développement de nouveaux types …

[引用][C] Combining Approaches for Predicting Genomic Evolution

R de Génomes