Natural language processing systems for capturing and standardizing unstructured clinical information: a systematic review

K Kreimeyer, M Foster, A Pandey, N Arya… - Journal of biomedical …, 2017 - Elsevier
We followed a systematic approach based on the Preferred Reporting Items for Systematic
Reviews and Meta-Analyses to identify existing clinical natural language processing (NLP) …

Natural language processing in oncology: a review

W Yim, M Yetisgen, WP Harris, SW Kwan - JAMA oncology, 2016 - jamanetwork.com
Importance Natural language processing (NLP) has the potential to accelerate translation of
cancer treatments from the laboratory to the clinic and will be a powerful tool in the era of …

Large language models are few-shot clinical information extractors

M Agrawal, S Hegselmann, H Lang, Y Kim… - arXiv preprint arXiv …, 2022 - arxiv.org
A long-running goal of the clinical NLP community is the extraction of important variables
trapped in clinical notes. However, roadblocks have included dataset shift from the general …

Unravelling the human genome–phenome relationship using phenome-wide association studies

WS Bush, MT Oetjens, DC Crawford - Nature Reviews Genetics, 2016 - nature.com
Advances in genotyping technology have, over the past decade, enabled the focused
search for common genetic variation associated with human diseases and traits. With the …

[HTML][HTML] The effect of occupational exposure to ergonomic risk factors on osteoarthritis of hip or knee and selected other musculoskeletal diseases: A systematic review …

CTJ Hulshof, F Pega, S Neupane, C Colosio… - Environment …, 2021 - Elsevier
Abstract Background The World Health Organization (WHO) and the International Labour
Organization (ILO) are developing joint estimates of the work-related burden of disease and …

Med7: A transferable clinical natural language processing model for electronic health records

A Kormilitzin, N Vaci, Q Liu… - Artificial Intelligence in …, 2021 - Elsevier
Electronic health record systems are ubiquitous and the majority of patients' data are now
being collected electronically in the form of free text. Deep learning has significantly …

Tasks as needs: reframing the paradigm of clinical natural language processing research for real-world decision support

A Lederman, R Lederman… - Journal of the American …, 2022 - academic.oup.com
Electronic medical records are increasingly used to store patient information in hospitals and
other clinical settings. There has been a corresponding proliferation of clinical natural …

Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies

MG Kersloot, FJP van Putten, A Abu-Hanna… - Journal of biomedical …, 2020 - Springer
Background Free-text descriptions in electronic health records (EHRs) can be of interest for
clinical research and care optimization. However, free text cannot be readily interpreted by a …

How can natural language processing help model informed drug development?: a review

R Bhatnagar, S Sardar, M Beheshti, JT Podichetty - JAMIA open, 2022 - academic.oup.com
Objective To summarize applications of natural language processing (NLP) in model
informed drug development (MIDD) and identify potential areas of improvement. Materials …

A study of deep learning approaches for medication and adverse drug event extraction from clinical text

Q Wei, Z Ji, Z Li, J Du, J Wang, J Xu… - Journal of the …, 2020 - academic.oup.com
Objective This article presents our approaches to extraction of medications and associated
adverse drug events (ADEs) from clinical documents, which is the second track of the 2018 …