An enhanced isothermal amplification assay for viral detection
Rapid, inexpensive, robust diagnostics are essential to control the spread of infectious
diseases. Current state of the art diagnostics are highly sensitive and specific, but slow, and …
diseases. Current state of the art diagnostics are highly sensitive and specific, but slow, and …
Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples
Frequent and widespread testing of members of the population who are asymptomatic for
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is essential for the …
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is essential for the …
LAMP-Seq: population-scale COVID-19 diagnostics using combinatorial barcoding
The ongoing SARS-CoV-2 pandemic has already caused devastating losses. Exponential
spread can be slowed by social distancing and population-wide isolation measures, but …
spread can be slowed by social distancing and population-wide isolation measures, but …
LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding
Frequent testing of large population groups combined with contact tracing and isolation
measures will be crucial for containing Coronavirus Disease 2019 outbreaks. Here we …
measures will be crucial for containing Coronavirus Disease 2019 outbreaks. Here we …
Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing
The rapid spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is due
to the high rates of transmission by individuals who are asymptomatic at the time of …
to the high rates of transmission by individuals who are asymptomatic at the time of …
Highly Flexible Deep-Learning-Based Automatic Analysis for Graphically Encoded Hydrogel Microparticles
Graphically encoded hydrogel microparticle (HMP)-based bioassay is a diagnostic tool
characterized by exceptional multiplex detectability and robust sensitivity and specificity …
characterized by exceptional multiplex detectability and robust sensitivity and specificity …
Quantifying orthogonal barcodes for sequence census assays
AS Booeshaghi, KH Min, J Gehring… - Bioinformatics …, 2024 - academic.oup.com
Barcode-based sequence census assays utilize custom or random oligonucloetide
sequences to label various biological features, such as cell-surface proteins or CRISPR …
sequences to label various biological features, such as cell-surface proteins or CRISPR …
Efficient algorithms for the bee-identification problem
The bee-identification problem, formally defined by Tandon, Tan, and Varshney (2019),
requires the receiver to identify “bees” using a set of unordered noisy measurements. In this …
requires the receiver to identify “bees” using a set of unordered noisy measurements. In this …
Early sample tagging and pooling enables simultaneous SARS-CoV-2 detection and variant sequencing
A Chappleboim, D Joseph-Strauss, A Rahat… - Science Translational …, 2021 - science.org
Most severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) diagnostic tests have
relied on RNA extraction followed by reverse transcription quantitative polymerase chain …
relied on RNA extraction followed by reverse transcription quantitative polymerase chain …
Bee identification problem for DNA strands
J Chrisnata, HM Kiah, A Vardy… - IEEE Journal on …, 2023 - ieeexplore.ieee.org
Motivated by DNA-based applications, we generalize the bee identification problem
proposed by Tandon et al.(2019). In this setup, we transmit all codewords from a codebook …
proposed by Tandon et al.(2019). In this setup, we transmit all codewords from a codebook …