The structural basis of antibody-antigen recognition

I Sela-Culang, V Kunik, Y Ofran - Frontiers in immunology, 2013 - frontiersin.org
The function of antibodies (Abs) involves specific binding to antigens (Ags) and activation of
other components of the immune system to fight pathogens. The six hypervariable loops …

Peptide-based vaccines for tuberculosis

W Gong, C Pan, P Cheng, J Wang, G Zhao… - Frontiers in …, 2022 - frontiersin.org
Tuberculosis (TB) is an infectious disease caused by Mycobacterium tuberculosis. As a
result of the coronavirus disease 2019 (COVID-19) pandemic, the global TB mortality rate in …

Reliable B cell epitope predictions: impacts of method development and improved benchmarking

JV Kringelum, C Lundegaard, O Lund… - PLoS computational …, 2012 - journals.plos.org
The interaction between antibodies and antigens is one of the most important immune
system mechanisms for clearing infectious organisms from the host. Antibodies bind to …

Understanding the significance and implications of antibody numbering and antigen-binding surface/residue definition

M Dondelinger, P Filée, E Sauvage, B Quinting… - Frontiers in …, 2018 - frontiersin.org
Monoclonal antibodies are playing an increasing role in both human and animal health.
Different strategies of protein and chemical engineering, including humanization techniques …

Computer-aided antibody design

D Kuroda, H Shirai, MP Jacobson… - … engineering, design & …, 2012 - academic.oup.com
Recent clinical trials using antibodies with low toxicity and high efficiency have raised
expectations for the development of next-generation protein therapeutics. However, the …

epitope3D: a machine learning method for conformational B-cell epitope prediction

BM da Silva, YC Myung, DB Ascher… - Briefings in …, 2022 - academic.oup.com
The ability to identify antigenic determinants of pathogens, or epitopes, is fundamental to
guide rational vaccine development and immunotherapies, which are particularly relevant …

Specificity, polyspecificity and heterospecificity of antibody-antigen recognition

MHV Van Regenmortel… - … : A Review of 20 Years of …, 2019 - Springer
The concept of antibody specificity is analyzed and shown to reside in the ability of an
antibody to discriminate between two antigens. Initially antibody specificity was attributed to …

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results

S Liang, D Zheng, DM Standley, B Yao, M Zacharias… - BMC …, 2010 - Springer
Background Accurate prediction of antigenic epitopes is important for immunologic research
and medical applications, but it is still an open problem in bioinformatics. The case for …

Progress and challenges in predicting protein interfaces

R Esmaielbeiki, K Krawczyk, B Knapp… - Briefings in …, 2016 - academic.oup.com
The majority of biological processes are mediated via protein–protein interactions.
Determination of residues participating in such interactions improves our understanding of …

Current and prospective computational approaches and challenges for developing COVID-19 vaccines

W Hwang, W Lei, NM Katritsis, M MacMahon… - Advanced drug delivery …, 2021 - Elsevier
Abstract SARS-CoV-2, which causes COVID-19, was first identified in humans in late 2019
and is a coronavirus which is zoonotic in origin. As it spread around the world there has …