Giant transposons in eukaryotes: is bigger better?

IR Arkhipova, IA Yushenova - Genome biology and evolution, 2019 - academic.oup.com
Transposable elements (TEs) are ubiquitous in both prokaryotes and eukaryotes, and the
dynamic character of their interaction with host genomes brings about numerous …

Paleovirology of the DNA viruses of eukaryotes

JGN Barreat, A Katzourakis - Trends in Microbiology, 2022 - cell.com
Paleovirology is the study of ancient viruses and how they have coevolved with their hosts.
An increasingly detailed understanding of the diversity, origins, and evolution of the DNA …

Giant Starship Elements Mobilize Accessory Genes in Fungal Genomes

E Gluck-Thaler, T Ralston, Z Konkel… - Molecular biology …, 2022 - academic.oup.com
Accessory genes are variably present among members of a species and are a reservoir of
adaptive functions. In bacteria, differences in gene distributions among individuals largely …

Host–endosymbiont genome integration in a deep-sea chemosymbiotic clam

JCH Ip, T Xu, J Sun, R Li, C Chen, Y Lan… - Molecular Biology …, 2021 - academic.oup.com
Endosymbiosis with chemosynthetic bacteria has enabled many deep-sea invertebrates to
thrive at hydrothermal vents and cold seeps, but most previous studies on this mutualism …

Gene acquisition by giant transposons primes eukaryotes for rapid evolution via horizontal gene transfer

AS Urquhart, E Gluck-Thaler, AA Vogan - Science Advances, 2024 - science.org
Horizontal gene transfer (HGT) disseminates genetic information between species and is a
powerful mechanism of adaptation. Yet, we know little about its underlying drivers in …

The Enterprise, a massive transposon carrying Spok meiotic drive genes

AA Vogan, SL Ament-Velásquez, E Bastiaans… - Genome …, 2021 - genome.cshlp.org
The genomes of eukaryotes are full of parasitic sequences known as transposable elements
(TEs). Here, we report the discovery of a putative giant tyrosine-recombinase-mobilized DNA …

Comparative analysis of genome-encoded viral sequences reveals the evolutionary history of flavivirids (family Flaviviridae)

CGG Bamford, WM de Souza, R Parry… - Virus …, 2022 - academic.oup.com
Flavivirids (family Flaviviridae) are a group of positive-strand ribonucleic acid (RNA) viruses
that pose serious risks to human and animal health on a global scale. Here, we use flavivirid …

A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus fossil record

D Blanco-Melo, MA Campbell, H Zhu, TPW Dennis… - Genome Biology, 2024 - Springer
Background Genomic regions that remain poorly understood, often referred to as the dark
genome, contain a variety of functionally relevant and biologically informative features …

Phylogenomics of the Maverick Virus-Like Mobile Genetic Elements of Vertebrates

JGN Barreat, A Katzourakis - Molecular biology and evolution, 2021 - academic.oup.com
Mavericks are virus-like mobile genetic elements found in the genomes of eukaryotes.
Although Mavericks encode capsid morphogenesis homologs, their viral particles have not …

Co-option of a non-retroviral endogenous viral element in planthoppers

HJ Huang, YY Li, ZX Ye, LL Li, QL Hu, YJ He… - Nature …, 2023 - nature.com
Non-retroviral endogenous viral elements (nrEVEs) are widely dispersed throughout the
genomes of eukaryotes. Although nrEVEs are known to be involved in host antiviral …