Complex network approaches to nonlinear time series analysis

Y Zou, RV Donner, N Marwan, JF Donges, J Kurths - Physics Reports, 2019 - Elsevier
In the last decade, there has been a growing body of literature addressing the utilization of
complex network methods for the characterization of dynamical systems based on time …

Characterization of complex networks: A survey of measurements

LF Costa, FA Rodrigues, G Travieso… - Advances in …, 2007 - Taylor & Francis
Each complex network (or class of networks) presents specific topological features which
characterize its connectivity and highly influence the dynamics of processes executed on the …

Triadic closure in two-mode networks: Redefining the global and local clustering coefficients

T Opsahl - Social networks, 2013 - Elsevier
As the vast majority of network measures are defined for one-mode networks, two-mode
networks often have to be projected onto one-mode networks to be analyzed. A number of …

Bipartite network projection and personal recommendation

T Zhou, J Ren, M Medo, YC Zhang - … Review E—Statistical, Nonlinear, and Soft …, 2007 - APS
One-mode projecting is extensively used to compress bipartite networks. Since one-mode
projection is always less informative than the bipartite representation, a proper weighting …

Bipartite graphs in systems biology and medicine: a survey of methods and applications

GA Pavlopoulos, PI Kontou, A Pavlopoulou… - …, 2018 - academic.oup.com
The latest advances in high-throughput techniques during the past decade allowed the
systems biology field to expand significantly. Today, the focus of biologists has shifted from …

Basic notions for the analysis of large two-mode networks

M Latapy, C Magnien, N Del Vecchio - Social networks, 2008 - Elsevier
Many large real-world networks actually have a two-mode nature: their nodes may be
separated into two classes, the links being between nodes of different classes only. Despite …

Evolution of resilience in protein interactomes across the tree of life

M Zitnik, R Sosič, MW Feldman… - Proceedings of the …, 2019 - National Acad Sciences
Phenotype robustness to environmental fluctuations is a common biological phenomenon.
Although most phenotypes involve multiple proteins that interact with each other, the basic …

The double-stranded DNA virosphere as a modular hierarchical network of gene sharing

J Iranzo, M Krupovic, EV Koonin - MBio, 2016 - Am Soc Microbiol
Virus genomes are prone to extensive gene loss, gain, and exchange and share no
universal genes. Therefore, in a broad-scale study of virus evolution, gene and genome …

[PDF][PDF] Vertex Priority Based Butterfly Counting for Large-scale Bipartite Networks.

K Wang, X Lin, L Qin, W Zhang, Y Zhang - PVLDB, 2019 - opus.lib.uts.edu.au
Bipartite networks are of great importance in many realworld applications. In bipartite
networks, butterfly (ie, a complete 2× 2 biclique) is the smallest non-trivial cohesive structure …

Clustering coefficient and community structure of bipartite networks

P Zhang, J Wang, X Li, M Li, Z Di, Y Fan - Physica A: Statistical Mechanics …, 2008 - Elsevier
Many real-world networks display natural bipartite structure, where the basic cycle is a
square. In this paper, with the similar consideration of standard clustering coefficient in …