Genomics, gene expression and DNA arrays

DJ Lockhart, EA Winzeler - Nature, 2000 - nature.com
Experimental genomics in combination with the growing body of sequence information
promise to revolutionize the way cells and cellular processes are studied. Information on …

What is bioinformatics? A proposed definition and overview of the field

NM Luscombe, D Greenbaum… - Methods of information …, 2001 - thieme-connect.com
Background: The recent flood of data from genome sequences and functional genomics has
given rise to new field, bioinformatics, which combines elements of biology and computer …

Gene ontology: tool for the unification of biology

M Ashburner, CA Ball, JA Blake, D Botstein, H Butler… - Nature …, 2000 - nature.com
Genomic sequencing has made it clear that a large fraction of the genes specifying the core
biological functions are shared by all eukaryotes. Knowledge of the biological role of such …

An automated method for finding molecular complexes in large protein interaction networks

GD Bader, CWV Hogue - BMC bioinformatics, 2003 - Springer
Background Recent advances in proteomics technologies such as two-hybrid, phage
display and mass spectrometry have enabled us to create a detailed map of biomolecular …

Functional profiling of the Saccharomyces cerevisiae genome

G Giaever, AM Chu, L Ni, C Connelly, L Riles… - nature, 2002 - nature.com
Determining the effect of gene deletion is a fundamental approach to understanding gene
function. Conventional genetic screens exhibit biases, and genes contributing to a …

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

RS Kamath, AG Fraser, Y Dong, G Poulin, R Durbin… - Nature, 2003 - nature.com
A principal challenge currently facing biologists is how to connect the complete DNA
sequence of an organism to its development and behaviour. Large-scale targeted-deletions …

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

MP Washburn, D Wolters, JR Yates - Nature biotechnology, 2001 - nature.com
We describe a largely unbiased method for rapid and large-scale proteome analysis by
multidimensional liquid chromatography, tandem mass spectrometry, and database …

[PDF][PDF] Gene Ontology: tool for the unification of biology

D Botstein, JM Cherry, M Ashburner, CA Ball, JA Blake… - Nat genet, 2000 - academia.edu
Genomic sequencing has made it clear that a large fraction of the genes specifying the core
biological functions are shared by all eukaryotes. Knowledge of the biological role of such …

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore… - Nature, 2002 - nature.com
The recent abundance of genome sequence data has brought an urgent need for systematic
proteomics to decipher the encoded protein networks that dictate cellular function. To date …

The genome sequence of Schizosaccharomyces pombe

V Wood, R Gwilliam, MA Rajandream, M Lyne, R Lyne… - Nature, 2002 - nature.com
We have sequenced and annotated the genome of fission yeast (Schizosaccharomyces
pombe), which contains the smallest number of protein-coding genes yet recorded for a …