High-speed atomic force microscopy for filming protein molecules in dynamic action

T Ando, S Fukuda, KX Ngo… - Annual Review of …, 2023 - annualreviews.org
Structural biology is currently undergoing a transformation into dynamic structural biology,
which reveals the dynamic structure of proteins during their functional activity to better …

High-speed atomic force microscopy

T Ando - Current opinion in chemical biology, 2019 - Elsevier
High-speed atomic force microscopy (HS-AFM) is a unique tool for molecular imaging. It can
directly visualize protein molecules during their functional activity at high spatiotemporal …

Insight Into Distinct Functional Roles of the Flagellar ATPase Complex for Flagellar Assembly in Salmonella

T Minamino, M Kinoshita, K Namba - Frontiers in Microbiology, 2022 - frontiersin.org
Most motile bacteria utilize the flagellar type III secretion system (fT3SS) to construct the
flagellum, which is a supramolecular motility machine consisting of basal body rings and an …

Catalytic robustness and torque generation of the F1-ATPase

H Noji, H Ueno, DGG McMillan - Biophysical Reviews, 2017 - Springer
The F 1-ATPase is the catalytic portion of the F o F 1 ATP synthase and acts as a rotary
molecular motor when it hydrolyzes ATP. Two decades have passed since the single …

Accounts of applied molecular rotors and rotary motors: recent advances

A Singhania, S Kalita, P Chettri, S Ghosh - Nanoscale Advances, 2023 - pubs.rsc.org
Molecular machines are nanoscale devices capable of performing mechanical works at
molecular level. These systems could be a single molecule or a collection of component …

[HTML][HTML] Rotary properties of hybrid F1-ATPases consisting of subunits from different species

RR Watanabe, BT Kiper, M Zarco-Zavala, M Hara… - IScience, 2023 - cell.com
Summary F 1-ATPase (F 1) is an ATP-driven rotary motor protein ubiquitously found in many
species as the catalytic portion of F o F 1-ATP synthase. Despite the highly conserved amino …

Multiscale molecular dynamics simulations of rotary motor proteins

T Ekimoto, M Ikeguchi - Biophysical reviews, 2018 - Springer
Protein functions require specific structures frequently coupled with conformational changes.
The scale of the structural dynamics of proteins spans from the atomic to the molecular level …

Molecular rotor based on an oxidized resorcinarene

DT Payne, J Labuta, Z Futera, V Březina… - Organic Chemistry …, 2022 - pubs.rsc.org
Molecular rotors are an important class of dynamic molecules which have been studied not
only for their possible uses as components of molecular machines but also because of …

Rotation mechanism of molecular motor V1-ATPase studied by multiscale molecular dynamics simulation

Y Isaka, T Ekimoto, Y Kokabu, I Yamato, T Murata… - Biophysical journal, 2017 - cell.com
Enterococcus hirae V 1-ATPase is a molecular motor composed of the A 3 B 3 hexamer ring
and the central stalk. In association with ATP hydrolysis, three catalytic AB pairs in the A 3 B …

Re-engineering of protein motors to understand mechanisms biasing random motion and generating collective dynamics

K Furuta, A Furuta - Current opinion in biotechnology, 2018 - Elsevier
Highlights•Protein-based biomolecular motors are remarkable energy transducers.•Recent
efforts include re-engineering of individual and collective motor functions.•Constructive …