Microbiome and immunological interactions

D Kelly, IE Mulder - Nutrition reviews, 2012 - academic.oup.com
The healthy human gut supports a complex and diverse microbiota, dominated by bacterial
phylotypes belonging to Bacteroidetes and Firmicutes. In the inflamed gut, overall diversity …

[HTML][HTML] Ontology mapping for semantically enabled applications

I Harrow, R Balakrishnan, E Jimenez-Ruiz, S Jupp… - Drug discovery today, 2019 - Elsevier
Highlights•Ontology mapping enables data analytics through interoperability and
integration.•Mapping between ontologies expands coverage across large domains such as …

Integrated nuclear proteomics and transcriptomics identifies S100A4 as a therapeutic target in acute myeloid leukemia

B Alanazi, CR Munje, N Rastogi, AJK Williamson… - Leukemia, 2020 - nature.com
Inappropriate localization of proteins can interfere with normal cellular function and drive
tumor development. To understand how this contributes to the development of acute myeloid …

Selection of personalized patient therapy through the use of knowledge-based computational models that identify tumor-driving signal transduction pathways

W Verhaegh, H van Ooijen, MA Inda, P Hatzis… - Cancer research, 2014 - AACR
Increasing knowledge about signal transduction pathways as drivers of cancer growth has
elicited the development of “targeted drugs,” which inhibit aberrant signaling pathways. They …

Fatigue is associated with inflammation in patients with head and neck cancer before and after intensity-modulated radiation therapy

C Xiao, JJ Beitler, KA Higgins, K Conneely… - Brain, behavior, and …, 2016 - Elsevier
Patients with head and neck cancer (HNC) receiving intensity-modulated radiation therapy
(IMRT) have particularly high rates of fatigue, and pre-and post-radiotherapy fatigue are …

Association of childhood trauma with fatigue, depression, stress, and inflammation in breast cancer patients undergoing radiotherapy

TJ Han, JC Felger, A Lee, D Mister, AH Miller… - Psycho …, 2016 - Wiley Online Library
Background This pilot study examined whether breast cancer patients with childhood trauma
exhibit increased fatigue, depression, and stress in association with inflammation as a result …

[HTML][HTML] Assessment of functional phosphatidylinositol 3-kinase pathway activity in cancer tissue using forkhead box-O target gene expression in a knowledge-based …

H Van Ooijen, M Hornsveld, C Dam-de Veen… - The American journal of …, 2018 - Elsevier
The phosphatidylinositol 3-kinase (PI3K) pathway is commonly activated in cancer. Tumors
are potentially sensitive to PI3K pathway inhibitors, but reliable diagnostic tests that assess …

Predictors of depression in breast cancer patients treated with radiation: role of prior chemotherapy and nuclear factor kappa B

MA Torres, TW Pace, T Liu, JC Felger, D Mister… - Cancer, 2013 - Wiley Online Library
BACKGROUND Depression is common during and after breast cancer treatment. However,
the role of specific therapeutic modalities and related biologic mechanisms remains unclear …

Cell cycle networks link gene expression dysregulation, mutation, and brain maldevelopment in autistic toddlers

T Pramparo, MV Lombardo, K Campbell… - Molecular systems …, 2015 - embopress.org
Genetic mechanisms underlying abnormal early neural development in toddlers with Autism
Spectrum Disorder (ASD) remain uncertain due to the impossibility of direct brain gene …

Transcriptional signatures related to glucose and lipid metabolism predict treatment response to the tumor necrosis factor antagonist infliximab in patients with …

D Mehta, CL Raison, BJ Woolwine, E Haroon… - Brain, behavior, and …, 2013 - Elsevier
The tumor necrosis factor (TNF) antagonist infliximab was recently found to reduce
depressive symptoms in patients with increased baseline inflammation as reflected by a …