Detecting genetic responses to environmental change

AA Hoffmann, Y Willi - Nature Reviews Genetics, 2008 - nature.com
Abstract Changes in environmental conditions can rapidly shift allele frequencies in
populations of species with relatively short generation times. Frequency shifts might be …

Admixture as the basis for genetic mapping

CA Buerkle, C Lexer - Trends in ecology & evolution, 2008 - cell.com
Genetic mapping in natural populations is increasing rapidly in feasibility and accessibility.
As with many areas in genetics, advances in molecular techniques and statistics are …

Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …

Mouse genomic variation and its effect on phenotypes and gene regulation

TM Keane, L Goodstadt, P Danecek, MA White… - Nature, 2011 - nature.com
We report genome sequences of 17 inbred strains of laboratory mice and identify almost ten
times more variants than previously known. We use these genomes to explore the …

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

PA Hohenlohe, S Bassham, PD Etter, N Stiffler… - PLoS …, 2010 - journals.plos.org
Next-generation sequencing technology provides novel opportunities for gathering genome-
scale sequence data in natural populations, laying the empirical foundation for the evolving …

A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)

T Kamiya, W Kai, S Tasumi, A Oka, T Matsunaga… - PLoS …, 2012 - journals.plos.org
Heterogametic sex chromosomes have evolved independently in various lineages of
vertebrates. Such sex chromosome pairs often contain nonrecombining regions, with one of …

Adaptive evolution of multiple traits through multiple mutations at a single gene

CR Linnen, YP Poh, BK Peterson, RDH Barrett… - Science, 2013 - science.org
The identification of precise mutations is required for a complete understanding of the
underlying molecular and evolutionary mechanisms driving adaptive phenotypic change …

Insights into mammalian biology from the wild house mouse Mus musculus

M Phifer-Rixey, MW Nachman - elife, 2015 - elifesciences.org
The house mouse, Mus musculus, was established in the early 1900s as one of the first
genetic model organisms owing to its short generation time, comparatively large litters, ease …

On the origin and spread of an adaptive allele in deer mice

CR Linnen, EP Kingsley, JD Jensen, HE Hoekstra - Science, 2009 - science.org
Adaptation is a central focus of biology, although it can be difficult to identify both the
strength and agent of selection and the underlying molecular mechanisms causing change …

How array design creates SNP ascertainment bias

J Geibel, C Reimer, S Weigend, A Weigend, T Pook… - PloS one, 2021 - journals.plos.org
Single nucleotide polymorphisms (SNPs), genotyped with arrays, have become a widely
used marker type in population genetic analyses over the last 10 years. However, compared …