Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2

K Gao, R Wang, J Chen, L Cheng, J Frishcosy… - Chemical …, 2022 - ACS Publications
Despite tremendous efforts in the past two years, our understanding of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …

Design, synthesis and in vitro evaluation of novel SARS-CoV-2 3CLpro covalent inhibitors

JK Stille, J Tjutrins, G Wang, FA Venegas… - European journal of …, 2022 - Elsevier
Severe diseases such as the ongoing COVID-19 pandemic, as well as the previous SARS
and MERS outbreaks, are the result of coronavirus infections and have demonstrated the …

[HTML][HTML] Structure-based approaches against COVID-19

TC Huang, KH Liang, TJ Chang, KF Hung… - Journal of the …, 2024 - journals.lww.com
Abstract The coronavirus disease 2019 (COVID-19) pandemic has had a major impact on
human life. This review highlights the versatile roles of both classical and modern structure …

Molecular docking and dynamics approach to in silico drug repurposing for inflammatory bowels disease by targeting TNF alpha

D Halder, S Das, A Joseph… - Journal of Biomolecular …, 2023 - Taylor & Francis
Inflammatory bowel disease is a chronic disorder of the large intestine with the prevalence of
approximately 400 cases in 100000, and it is rising day by day. However, several drugs like …

Identification of probable inhibitors for the DNA polymerase of the Monkeypox virus through the virtual screening approach

S Kumari, S Chakraborty, M Ahmad, V Kumar… - International Journal of …, 2023 - Elsevier
Given the paucity of antiviral treatments for monkeypox disease, caused by the Monkeypox
virus (MPXV), there is a pressing need for the development/identification of new drugs to …

Plant derived active compounds of ayurvedic neurological formulation, Saraswatharishta as a potential dual leucine zipper kinase inhibitor: an in-silico study

S Koirala, R Roy, S Samanta… - Journal of Biomolecular …, 2023 - Taylor & Francis
Recent findings have highlighted the essential role of dual leucine zipper kinase (DLK) in
neuronal degeneration. Saraswatharishta (SWRT), an ayurvedic formulation utilized in …

Prediction of Rab5B inhibitors through integrative in silico techniques

D Kashyap, S Koirala, V Saini, PH Bagde, S Samanta… - Molecular Diversity, 2023 - Springer
Rab5B is a small monomeric G protein that regulates early endocytosis and controls
signaling pathways related to cell growth, survival, and apoptosis. Dysregulation of Rab5B …

Withania somnifera extract reduces gastric cancerous properties through inhibition of gankyrin in cellular milieu produced by Helicobacter pylori and Epstein Barr …

D Kashyap, R Roy, N Varshney, B Baral… - Journal of …, 2023 - Taylor & Francis
Abstract Helicobacter pylori and Epstein Barr virus (EBV) are group1 carcinogens and their
role in Gastric cancer (GC) is well established. Previously we have shown that H. pylori and …

[HTML][HTML] A combination of virtual screening, molecular dynamics simulation, MM/PBSA, ADMET, and DFT calculations to identify a potential DPP4 inhibitor

F Zare, E Ataollahi, P Mardaneh, A Sakhteman… - Scientific Reports, 2024 - nature.com
DPP4 inhibitors can control glucose homeostasis by increasing the level of GLP-1 incretins
hormone due to dipeptidase mimicking. Despite the potent effects of DPP4 inhibitors, these …

[HTML][HTML] Computational studies indicated the effectiveness of human metabolites against SARS-CoV-2 main protease

R Roy, MF Sk, O Tanwar, P Kar - Molecular Diversity, 2023 - Springer
To fight against the devastating coronavirus disease 2019 (COVID-19), identifying robust
anti-SARS-CoV-2 therapeutics from all possible directions is necessary. To contribute to this …