Mechanisms and concepts in RNA virus population dynamics and evolution

PT Dolan, ZJ Whitfield, R Andino - Annual Review of Virology, 2018 - annualreviews.org
RNA viruses are unique in their evolutionary capacity, exhibiting high mutation rates and
frequent recombination. They rapidly adapt to environmental changes, such as shifts in …

Mechanisms and consequences of positive-strand RNA virus recombination

K Bentley, DJ Evans - Journal of General Virology, 2018 - microbiologyresearch.org
Genetic recombination in positive-strand RNA viruses is a significant evolutionary
mechanism that drives the creation of viral diversity by the formation of novel chimaeric …

Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck

KM Braun, GK Moreno, PJ Halfmann… - PLoS …, 2021 - journals.plos.org
The evolutionary mechanisms by which SARS-CoV-2 viruses adapt to mammalian hosts
and, potentially, undergo antigenic evolution depend on the ways genetic variation is …

High-resolution mapping reveals the mechanism and contribution of genome insertions and deletions to RNA virus evolution

M Aguilar Rangel, PT Dolan… - Proceedings of the …, 2023 - National Acad Sciences
RNA viruses rapidly adapt to selective conditions due to the high intrinsic mutation rates of
their RNA-dependent RNA polymerases (RdRps). Insertions and deletions (indels) in viral …

A defective viral genome strategy elicits broad protective immunity against respiratory viruses

Y Xiao, PV Lidsky, Y Shirogane, R Aviner, CT Wu, W Li… - Cell, 2021 - cell.com
RNA viruses generate defective viral genomes (DVGs) that can interfere with replication of
the parental wild-type virus. To examine their therapeutic potential, we created a DVG by …

Organ-specific genome diversity of replication-competent SARS-CoV-2

J Van Cleemput, W van Snippenberg… - Nature …, 2021 - nature.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection is not always
confined to the respiratory system, as it impacts people on a broad clinical spectrum from …

Engineering the live-attenuated polio vaccine to prevent reversion to virulence

M Te Yeh, E Bujaki, PT Dolan, M Smith, R Wahid… - Cell host & …, 2020 - cell.com
The live-attenuated oral poliovirus vaccine (OPV or Sabin vaccine) replicates in gut-
associated tissues, eliciting mucosa and systemic immunity. OPV protects from disease and …

Single cell heterogeneity in influenza A virus gene expression shapes the innate antiviral response to infection

J Sun, JC Vera, J Drnevich, YT Lin, R Ke… - PLoS …, 2020 - journals.plos.org
Viral infection outcomes are governed by the complex and dynamic interplay between the
infecting virus population and the host response. It is increasingly clear that both viral and …

Recombination in enteroviruses, a multi-step modular evolutionary process

C Muslin, A Mac Kain, M Bessaud, B Blondel… - Viruses, 2019 - mdpi.com
RNA recombination is a major driving force in the evolution and genetic architecture shaping
of enteroviruses. In particular, intertypic recombination is implicated in the emergence of …

Polyglutamine-mediated ribotoxicity disrupts proteostasis and stress responses in Huntington's disease

R Aviner, TT Lee, VB Masto, KH Li, R Andino… - Nature Cell …, 2024 - nature.com
Huntington's disease (HD) is a neurodegenerative disorder caused by expansion of a CAG
trinucleotide repeat in the Huntingtin (HTT) gene, encoding a homopolymeric polyglutamine …