Relating sequence encoded information to form and function of intrinsically disordered proteins

RK Das, KM Ruff, RV Pappu - Current opinion in structural biology, 2015 - Elsevier
Highlights•Compositions of IDPs fall into distinct classes.•Compositional classes encode
preferences for distinct conformational classes.•Functions of disordered proteins are …

NMR provides unique insight into the functional dynamics and interactions of intrinsically disordered proteins

AR Camacho-Zarco, V Schnapka, S Guseva… - Chemical …, 2022 - ACS Publications
Intrinsically disordered proteins are ubiquitous throughout all known proteomes, playing
essential roles in all aspects of cellular and extracellular biochemistry. To understand their …

Identification of dynamic modes in an intrinsically disordered protein using temperature-dependent NMR relaxation

A Abyzov, N Salvi, R Schneider, D Maurin… - Journal of the …, 2016 - ACS Publications
The dynamic modes and time scales sampled by intrinsically disordered proteins (IDPs)
define their function. Nuclear magnetic resonance (NMR) spin relaxation is probably the …

Tuning protein assembly pathways through superfast amyloid-like aggregation

C Li, L Xu, YY Zuo, P Yang - Biomaterials science, 2018 - pubs.rsc.org
Amyloid formation of proteins is not only relevant for neurodegenerative diseases, but has
recently emerged as a groundbreaking approach in materials science and biotechnology …

Disulfide-bond scrambling promotes amorphous aggregates in lysozyme and bovine serum albumin

M Yang, C Dutta, A Tiwari - The Journal of Physical Chemistry B, 2015 - ACS Publications
Disulfide bonds are naturally formed in more than 50% of amyloidogenic proteins, but the
exact role of disulfide bonds in protein aggregation is still not well-understood. The …

Lysozyme membranes promoted by hydrophobic substrates for ultrafast and precise organic solvent nanofiltration

MB Wu, F Yang, J Yang, Q Zhong, V Körstgen… - Nano …, 2020 - ACS Publications
Organic solvent nanofiltration (OSN) is regarded as a promising separation technology in
chemical and pharmaceutical industries. However, it remains a great challenge in …

Disulfide bond cleavage combined with critical pH induced unfolding and assembly of soy protein and its encapsulation effect on curcumin

Y Wang, S Sun, J Shen, B Zou, L Zhang, X Xu, C Wu - Food Hydrocolloids, 2024 - Elsevier
The limited water solubility and bioactivity of hydrophobic phytochemicals can be improved
and preserved by encapsulation technologies. In this research, a low-cost and low-energy …

Atomic resolution conformational dynamics of intrinsically disordered proteins from NMR spin relaxation

N Salvi, A Abyzov, M Blackledge - Progress in nuclear magnetic resonance …, 2017 - Elsevier
Nuclear magnetic resonance (NMR) spectroscopy is one of the most powerful experimental
approaches for investigating the conformational behaviour of intrinsically disordered …

Local order in the unfolded state: conformational biases and nearest neighbor interactions

S Toal, R Schweitzer-Stenner - Biomolecules, 2014 - mdpi.com
The discovery of Intrinsically Disordered Proteins, which contain significant levels of disorder
yet perform complex biologically functions, as well as unwanted aggregation, has motivated …

Secondary structure assignment for conformationally irregular peptides: Comparison between DSSP, STRIDE and KAKSI

Y Zhang, C Sagui - Journal of Molecular Graphics and Modelling, 2015 - Elsevier
Secondary structure assignment codes were built to explore the regularities associated with
the periodic motifs of proteins, such as those in backbone dihedral angles or in hydrogen …