Convergence diagnostics for markov chain monte carlo

V Roy - Annual Review of Statistics and Its Application, 2020 - annualreviews.org
Markov chain Monte Carlo (MCMC) is one of the most useful approaches to scientific
computing because of its flexible construction, ease of use, and generality. Indeed, MCMC is …

Tractable Bayesian density regression via logit stick-breaking priors

T Rigon, D Durante - Journal of Statistical Planning and Inference, 2021 - Elsevier
There is a growing interest in learning how the distribution of a response variable changes
with a set of observed predictors. Bayesian nonparametric dependent mixture models …

Convergence of position-dependent MALA with application to conditional simulation in GLMMs

V Roy, L Zhang - Journal of Computational and Graphical Statistics, 2023 - Taylor & Francis
We establish conditions under which Metropolis-Hastings (MH) algorithms with a position-
dependent proposal covariance matrix will or will not have the geometric rate of …

Convergence rates of two-component MCMC samplers

Q Qin, GL Jones - Bernoulli, 2022 - projecteuclid.org
Component-wise MCMC algorithms, including Gibbs and conditional Metropolis-Hastings
samplers, are commonly used for sampling from multivariate probability distributions. A long …

Estimating accuracy of the MCMC variance estimator: Asymptotic normality for batch means estimators

S Chakraborty, SK Bhattacharya, K Khare - Statistics & Probability Letters, 2022 - Elsevier
We establish asymptotic normality of the batch means estimator of MCMC variance for
reversible geometrically ergodic chains. Existing results use assumptions which are not …

[HTML][HTML] A double Pólya-Gamma data augmentation scheme for a hierarchical Negative Binomial-Binomial data model

X Ma, J Brynjarsdóttir, T LaFramboise - Computational Statistics & Data …, 2024 - Elsevier
A double Pólya-Gamma data augmentation scheme is developed for posterior sampling
from a Bayesian hierarchical model of total and categorical count data. The scheme applies …

MCMC for GLMMs

V Roy - Handbook of Statistics, 2022 - Elsevier
Generalized linear mixed models (GLMMs) are often used for analyzing correlated non-
Gaussian data. The likelihood function in a GLMM is available only as an intractable high …

Shrinkage with shrunken shoulders: Gibbs sampling shrinkage model posteriors with guaranteed convergence rates

A Nishimura, MA Suchard - Bayesian Analysis, 2022 - pmc.ncbi.nlm.nih.gov
Use of continuous shrinkage priors—with a “spike” near zero and heavy-tails towards infinity—
is an increasingly popular approach to induce sparsity in parameter estimates. When the …

A uniformly ergodic Gibbs sampler for Bayesian survival analysis

B Ren, J Morris, I Barnett - arXiv preprint arXiv:2402.15060, 2024 - arxiv.org
Finite sample inference for Cox models is an important problem in many settings, such as
clinical trials. Bayesian procedures provide a means for finite sample inference and …

Asynchronous and distributed data augmentation for massive data settings

J Zhou, K Khare, S Srivastava - Journal of Computational and …, 2023 - Taylor & Francis
Data augmentation (DA) algorithms are slow in massive data settings due to multiple passes
through the entire data. We address this problem by developing a DA extension that exploits …