Endogenous caulimovirids: fossils, zombies, and living in plant genomes

H Vassilieff, ADW Geering, N Choisne, PY Teycheney… - Biomolecules, 2023 - mdpi.com
The Caulimoviridae is a family of double-stranded DNA viruses that infect plants. The
genomes of most vascular plants contain endogenous caulimovirids (ECVs), a class of …

Introduction of Plant Transposon Annotation for Beginners

D Gao - Biology, 2023 - mdpi.com
Simple Summary Transposons are the most abundant repeats in plant genomes, and many
of them can produce transcripts and encode proteins that may result in overestimating and …

Endogenous viral elements: insights into data availability and accessibility

M Ritsch, N Brait, E Harvey, M Marz… - Virus Evolution, 2024 - academic.oup.com
Endogenous viral elements (EVEs) are remnants of viral genetic material endogenized into
the host genome. They have, in the last decades, attracted attention for their role as potential …

[HTML][HTML] EEfinder, a general purpose tool for identification of bacterial and viral endogenized elements in eukaryotic genomes

YJM Dias, FZ Dezordi, G da Luz Wallau - Computational and Structural …, 2024 - Elsevier
Horizontal gene transfer is a phenomenon of genetic material transmission between species
with no parental relationship. It has been characterized among several major branches of …

detectEVE: fast, sensitive and precise detection of endogenous viral elements in genomic data

N Brait, T Hackl, S Lequime - bioRxiv, 2024 - biorxiv.org
Endogenous viral elements (EVEs) are fragments of viral genomic material embedded
within the host genome. Retroviruses contribute to the majority of EVEs due to their genomic …