Autodock vina adopts more accurate binding poses but autodock4 forms better binding affinity

NT Nguyen, TH Nguyen, TNH Pham… - Journal of Chemical …, 2019 - ACS Publications
The binding pose and affinity between a ligand and enzyme are very important pieces of
information for computer-aided drug design. In the initial stage of a drug discovery project …

Dimerization of the Aβ42 under the Influence of the Gold Nanoparticle: A REMD Study

QM Thai, NT Tung, D Do Thi Mai… - The Journal of Physical …, 2024 - ACS Publications
Advances in Alzheimer's disease (AD) are related to the oligomerization of Amyloid β (Aβ)
peptides. Therefore, alteration of the process can prevent AD. We investigated the Aβ42 …

Cyanidin-3-O-glucoside inhibits Aβ40 fibrillogenesis, disintegrates preformed fibrils, and reduces amyloid cytotoxicity

F Liu, F Zhao, W Wang, J Sang, L Jia, L Li, F Lu - Food & function, 2020 - pubs.rsc.org
Alzheimer's disease (AD) is mainly caused by the fibrillogenesis of amyloid-β protein (Aβ).
Therefore, the development of effective inhibitors against Aβ fibrillogenesis offers great hope …

Modulation of beta-amyloid aggregation using ascorbic acid

I Sampaio, FD Quatroni, PMP Lins, AS Nascimento… - Biochimie, 2022 - Elsevier
Studies have shown that the level of ascorbic acid (AA) is reduced in the brain of Alzheimer's
disease (AD) patients. However, its effect on amyloid-β 1–42 (Aβ 42) aggregation has not …

Prediction of AChE-ligand affinity using the umbrella sampling simulation

NT Lan, KB Vu, MKD Ngoc, PT Tran, DM Hiep… - Journal of Molecular …, 2019 - Elsevier
Acetylcholinesterase (AChE) is characterized as a key target for designing inhibitors to
prevent Alzheimer's disease (AD). The binding free energy of a ligand to the AChE enzyme …

Impact of the Astaxanthin, Betanin, and EGCG Compounds on Small Oligomers of Amyloid Aβ40 Peptide

H Minh Hung, MT Nguyen, PT Tran… - Journal of Chemical …, 2020 - ACS Publications
There is experimental evidence that the astaxanthin, betanin, and epigallocatechin-3-gallate
(EGCG) compounds slow down the aggregation kinetics and the toxicity of the amyloid-β …

Computational Study of Amyloidβ42 Familial Mutations and Metal Interaction: Impact on Monomers and Aggregates Dynamical Behaviors

L Roldán-Martín, M Sodupe, JD Maréchal - Inorganic Chemistry, 2024 - ACS Publications
One of the main hallmarks of Alzheimer's Disease is the formation of β-amyloid plaques,
whose formation may be enhanced by metal binding or the appearance of familial …

Silver nanoparticles alter the dimerization of Aβ 42 studied by REMD simulations

QM Thai, PT Tran, HTT Phung, MQ Pham, ST Ngo - RSC advances, 2024 - pubs.rsc.org
The aggregation of amyloid beta (Aβ) peptides is associated with the development of
Alzheimer's disease (AD). However, there has been a growing belief that the oligomerization …

In vitro and in silico determination of glutaminyl cyclase inhibitors

PT Tran, VH Hoang, J Lee, TTT Hien, NT Tung… - RSC advances, 2019 - pubs.rsc.org
Alzheimer's disease (AD) is the most common form of neurodegenerative disease currently.
It is widely accepted that AD is characterized by the self-assembly of amyloid beta (Aβ) …

C-Terminal Plays as the Possible Nucleation of the Self-Aggregation of the S-Shape Aβ11–42 Tetramer in Solution: Intensive MD Study

NT Tung, P Derreumaux, VV Vu, PC Nam, ST Ngo - ACS omega, 2019 - ACS Publications
Amyloid beta (Aβ) peptides are characterized as the major factors associated with neuron
death in Alzheimer's disease, which is listed as the most common form of …