QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

G Nelson, U Boehm, S Bagley, P Bajcsy… - Journal of …, 2021 - Wiley Online Library
A modern day light microscope has evolved from a tool devoted to making primarily
empirical observations to what is now a sophisticated, quantitative device that is an integral …

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

M Hammer, M Huisman, A Rigano, U Boehm… - Nature …, 2021 - nature.com
Rigorous record-keeping and quality control are required to ensure the quality,
reproducibility and value of imaging data. The 4DN Initiative and BINA here propose light …

MethodsJ2: a software tool to capture metadata and generate comprehensive microscopy methods text

J Ryan, T Pengo, A Rigano, PM Llopis, MS Itano… - Nature …, 2021 - nature.com
To the Editor—Proper reporting of metadata is essential to reproduce microscopy
experiments, interpret results and share images1, 2. The lack of methods reporting in …

Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications

A Rigano, S Ehmsen, SU Ozturk, J Ryan, A Balashov… - BioRxiv, 2021 - biorxiv.org
For the information content of microscopy images to be appropriately interpreted,
reproduced, and meet FAIR (Findable Accessible Interoperable and Reusable) principles …

MethodsJ2: a software tool to improve microscopy methods reporting

J Ryan, T Pengo, A Rigano, PM Llopis, MS Itano… - BioRxiv, 2021 - biorxiv.org
Proper reporting of metadata is essential to reproduce microscopy experiments, interpret
results and share images. Experimental scientists can report details about sample …