Matrix-assisted laser desorption ionization–time of flight mass spectrometry: a fundamental shift in the routine practice of clinical microbiology

AE Clark, EJ Kaleta, A Arora… - Clinical microbiology …, 2013 - Am Soc Microbiol
Within the past decade, clinical microbiology laboratories experienced revolutionary
changes in the way in which microorganisms are identified, moving away from slow …

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

J Chun, FA Rainey - International journal of systematic …, 2014 - microbiologyresearch.org
The polyphasic approach used today in the taxonomy and systematics of the Bacteria and
Archaea includes the use of phenotypic, chemotaxonomic and genotypic data. The use of …

Shifting the genomic gold standard for the prokaryotic species definition

M Richter, R Rosselló-Móra - Proceedings of the National …, 2009 - National Acad Sciences
DNA-DNA hybridization (DDH) has been used for nearly 50 years as the gold standard for
prokaryotic species circumscriptions at the genomic level. It has been the only taxonomic …

Multilocus sequence analysis (MLSA) in prokaryotic taxonomy

SP Glaeser, P Kämpfer - Systematic and applied microbiology, 2015 - Elsevier
To obtain a higher resolution of the phylogenetic relationships of species within a genus or
genera within a family, multilocus sequence analysis (MLSA) is currently a widely used …

Infection prevention and control guideline for cystic fibrosis: 2013 update

L Saiman, JD Siegel, JJ LiPuma, RF Brown… - Infection Control & …, 2014 - cambridge.org
The 2013 Infection Prevention and Control (IP&C) Guideline for Cystic Fibrosis (CF) was
commissioned by the CF Foundation as an update of the 2003 Infection Control Guideline …

The changing microbial epidemiology in cystic fibrosis

JJ LiPuma - Clinical microbiology reviews, 2010 - Am Soc Microbiol
Infection of the airways remains the primary cause of morbidity and mortality in persons with
cystic fibrosis (CF). This review describes salient features of the epidemiologies of microbial …

Burkholderia: an update on taxonomy and biotechnological potential as antibiotic producers

E Depoorter, MJ Bull, C Peeters, T Coenye… - Applied microbiology …, 2016 - Springer
Burkholderia is an incredibly diverse and versatile Gram-negative genus, within which over
80 species have been formally named and multiple other genotypic groups likely represent …

Clinical significance of microbial infection and adaptation in cystic fibrosis

AR Hauser, M Jain, M Bar-Meir… - Clinical microbiology …, 2011 - Am Soc Microbiol
SUMMARY A select group of microorganisms inhabit the airways of individuals with cystic
fibrosis. Once established within the pulmonary environment in these patients, many of …

Legume-nodulating betaproteobacteria: diversity, host range, and future prospects

P Gyaneshwar, AM Hirsch, L Moulin… - Molecular plant …, 2011 - Am Phytopath Society
Rhizobia form specialized nodules on the roots of legumes (family Fabaceae) and fix
nitrogen in exchange for carbon from the host plant. Although the majority of legumes form …

[HTML][HTML] Burkholderia cenocepacia in cystic fibrosis: epidemiology and molecular mechanisms of virulence

P Drevinek, E Mahenthiralingam - Clinical Microbiology and Infection, 2010 - Elsevier
Burkholderia cepacia complex (Bcc) bacteria have gained notoriety as pathogens in cystic
fibrosis (CF) because they are difficult to identify and treat, and also have the ability to …