Molecular docking: principles, advances, and its applications in drug discovery

MT Muhammed, E Aki-Yalcin - Letters in Drug Design & …, 2024 - benthamdirect.com
Molecular docking is a structure-based computational method that generates the binding
pose and affinity between ligands and targets. There are many powerful docking programs …

Efficient exploration of chemical space with docking and deep learning

Y Yang, K Yao, MP Repasky, K Leswing… - Journal of Chemical …, 2021 - ACS Publications
With the advent of make-on-demand commercial libraries, the number of purchasable
compounds available for virtual screening and assay has grown explosively in recent years …

Looking for SARS-coV-2 therapeutics through computational approaches

M Vincenzi, FA Mercurio… - Current Medicinal …, 2023 - ingentaconnect.com
Background: In the last few years, in silico tools, including drug repurposing coupled with
structure-based virtual screening, have been extensively employed to look for anti-COVID …

Shape-Aware Synthon Search (SASS) for virtual screening of synthon-based chemical spaces

C Cheng, P Beroza - Journal of Chemical Information and …, 2024 - ACS Publications
Virtual screening of large-scale chemical libraries has become increasingly useful for
identifying high-quality candidates for drug discovery. While it is possible to exhaustively …

Virtual Screening of a Chemically Diverse “Superscaffold” Library Enables Ligand Discovery for a Key GPCR Target

K Grotsch, AV Sadybekov, S Hiller, S Zaidi… - ACS Chemical …, 2024 - ACS Publications
The advent of ultra-large libraries of drug-like compounds has significantly broadened the
possibilities in structure-based virtual screening, accelerating the discovery and optimization …

Benchmark and optimization of AlphaFold structures based virtual screening strategy

Y Peng, X Wu, L Lin, Z Deng, L Zhao, H Ke - bioRxiv, 2023 - biorxiv.org
Recent advancements in artificial intelligence such as AlphaFold, have enabled more
accurate prediction of protein three-dimensional structure from amino acid sequences. This …