[HTML][HTML] A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

DJ Lawson, L Van Dorp, D Falush - Nature communications, 2018 - nature.com
Genetic clustering algorithms, implemented in programs such as STRUCTURE and
ADMIXTURE, have been used extensively in the characterisation of individuals and …

[HTML][HTML] The influence of a priori grouping on inference of genetic clusters: simulation study and literature review of the DAPC method

JM Miller, CI Cullingham, RM Peery - Heredity, 2020 - nature.com
Inference of genetic clusters is a key aim of population genetics, sparking development of
numerous analytical methods. Within these, there is a conceptual divide between finding de …

OptM: estimating the optimal number of migration edges on population trees using Treemix

RR Fitak - Biology Methods and Protocols, 2021 - academic.oup.com
The software Treemix has become extensively used to estimate the number of migration
events, or edges (m), on population trees from genome-wide allele frequency data …

[图书][B] Population genetics

MB Hamilton - 2021 - books.google.com
Now updated for its second edition, Population Genetics is the classic, accessible
introduction to the concepts of population genetics. Combining traditional conceptual …

Cross-species hybridization and the origin of North African date palms

JM Flowers, KM Hazzouri… - Proceedings of the …, 2019 - National Acad Sciences
Date palm (Phoenix dactylifera L.) is a major fruit crop of arid regions that were
domesticated∼ 7,000 y ago in the Near or Middle East. This species is cultivated widely in …

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

TJ Shalev, OG El-Dien, MMS Yuen… - Genome …, 2022 - genome.cshlp.org
We assembled the 9.8-Gbp genome of western redcedar (WRC; Thuja plicata), an
ecologically and economically important conifer species of the Cupressaceae. The genome …

Confidently identifying the correct K value using the ΔK method: When does K = 2?

CI Cullingham, JM Miller, RM Peery… - Molecular …, 2020 - Wiley Online Library
Populations delineated based on genetic data are commonly used for wildlife conservation
and management. Many studies use the program structure combined with the ΔK method to …

The spatiotemporal spread of human migrations during the European Holocene

F Racimo, J Woodbridge, RM Fyfe… - Proceedings of the …, 2020 - National Acad Sciences
The European continent was subject to two major migrations of peoples during the
Holocene: the northwestward movement of Anatolian farmer populations during the …

Coalescent-based species delimitation is sensitive to geographic sampling and isolation by distance

NA Mason, NK Fletcher, BA Gill, WC Funk… - Systematics and …, 2020 - Taylor & Francis
Species are a fundamental unit of biodiversity that are delimited via genetic data and
coalescent-based methods with increasing frequency. Despite the widespread use of …

To mix or not to mix gene pools for threatened species management? Few studies use genetic data to examine the risks of both actions, but failing to do so leads …

E Liddell, P Sunnucks, CN Cook - Biological Conservation, 2021 - Elsevier
Many small, isolated populations lose genetic variation and suffer inbreeding, increasing
their extinction risk. Augmenting gene flow may alleviate these issues if populations are …