Genome-wide analyses of introgression between two sympatric Asian oak species

R Fu, Y Zhu, Y Liu, Y Feng, RS Lu, Y Li, P Li… - Nature Ecology & …, 2022 - nature.com
Introgression can be an important source of new alleles for adaption under rapidly changing
environments, perhaps even more important than standing variation. Though introgression …

Genomic insights on the contribution of balancing selection and local adaptation to the long‐term survival of a widespread living fossil tree, Cercidiphyllum japonicum

S Zhu, J Chen, J Zhao, HP Comes, P Li, C Fu… - New …, 2020 - Wiley Online Library
Summary 'Living fossils' are testimonies of long‐term sustained ecological success, but how
demographic history and natural selection contributed to their survival, resilience, and …

ezQTL: a web platform for interactive visualization and colocalization of QTLs and GWAS loci

T Zhang, A Klein, J Sang, J Choi… - Genomics, Proteomics …, 2022 - academic.oup.com
Genome-wide association studies (GWAS) have identified thousands of genomic loci
associated with complex diseases and traits, including cancer. The vast majority of common …

A powerful subset-based method identifies gene set associations and improves interpretation in UK Biobank

D Dutta, P VandeHaar, LG Fritsche, S Zöllner… - The American Journal of …, 2021 - cell.com
Tests of association between a phenotype and a set of genes in a biological pathway can
provide insights into the genetic architecture of complex phenotypes beyond those obtained …

[HTML][HTML] Pervasive correlations between causal disease effects of proximal SNPs vary with functional annotations and implicate stabilizing selection

MJ Zhang, A Durvasula, C Chiang, EM Koch… - Research …, 2023 - ncbi.nlm.nih.gov
The genetic architecture of human diseases and complex traits has been extensively
studied, but little is known about the relationship of causal disease effect sizes between …

Alzheimer's Disease Sequencing Project Release 4 Whole Genome Sequencing Dataset

YY Leung, WP Lee, AB Kuzma, HI Nicaretta… - medRxiv, 2024 - medrxiv.org
The Alzheimer's Disease Sequencing Project (ADSP) is a national initiative to understand
the genetic architecture of Alzheimer's Disease and Related Dementias (AD/ADRD) by …

NIAGADS Alzheimer's GenomicsDB: A resource for exploring Alzheimer's disease genetic and genomic knowledge

E Greenfest‐Allen, O Valladares… - Alzheimer's & …, 2024 - Wiley Online Library
Abstract INTRODUCTION The National Institute on Aging Genetics of Alzheimer's Disease
Data Storage Site Alzheimer's Genomics Database (GenomicsDB) is a public knowledge …

A powerful subset-based gene-set analysis method identifies novel associations and improves interpretation in UK Biobank

D Dutta, P VandeHaar, LG Fritsche, S Zöllner… - bioRxiv, 2019 - biorxiv.org
Tests of association between a phenotype and a set of genes in a biological pathway can
provide insights into the genetic architecture of complex phenotypes beyond those obtained …

Systematic mediation and interaction analyses in an individual population study help characterize kidney function genetic loci

D Ghasemi-Semeskandeh, D Emmert, E König, L Foco… - medRxiv, 2023 - medrxiv.org
Chronic kidney disease (CKD) is a complex disease affecting> 10% of the global population,
with large between-and within-continent variability reflecting major environmental effects. To …

GWLD: an R package for genome-wide linkage disequilibrium analysis

R Zhang, H Wu, Y Li, Z Huang, Z Yin… - G3: Genes …, 2023 - academic.oup.com
Linkage disequilibrium (LD) analysis is fundamental to the investigation of the genetic
architecture of complex traits (eg human disease, animal and plant breeding) and …