Uncovering post-translational modification-associated protein–protein interactions

S Wang, AO Osgood, A Chatterjee - Current opinion in structural biology, 2022 - Elsevier
In living systems, the chemical space and functional repertoire of proteins are dramatically
expanded through the post-translational modification (PTM) of various amino acid residues …

More than a metabolic enzyme: MTHFD2 as a novel target for anticancer therapy?

Z Zhu, GKK Leung - Frontiers in oncology, 2020 - frontiersin.org
The bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase (MTHFD2) is a
mitochondrial one-carbon folate metabolic enzyme whose role in cancer was not known …

The bump-and-hole tactic: expanding the scope of chemical genetics

K Islam - Cell chemical biology, 2018 - cell.com
Successful mapping of the human genome has sparked a widespread interest in
deciphering functional information encoded in gene sequences. However, because of the …

MTHFD1 interaction with BRD4 links folate metabolism to transcriptional regulation

S Sdelci, AF Rendeiro, P Rathert, W You, JMG Lin… - Nature …, 2019 - nature.com
The histone acetyl reader bromodomain-containing protein 4 (BRD4) is an important
regulator of chromatin structure and transcription, yet factors modulating its activity have …

Genetically encoded crosslinkers to address protein–protein interactions

Y Aydin, I Coin - Protein Science, 2023 - Wiley Online Library
Noncanonical amino acids (ncAAs) for photo‐and chemical crosslinking are powerful
biochemical tools for studying and manipulating interactions between proteins both in vitro …

Beyond the marks: reader-effectors as drivers of epigenetics and chromatin engineering

KA Franklin, CE Shields, KA Haynes - Trends in biochemical sciences, 2022 - cell.com
Chromatin is a system of proteins and DNA that regulates chromosome organization and
gene expression in eukaryotes. Essential features that support these processes include …

Photo-cross-linking to delineate epigenetic interactome

Z Zhang, J Lin, Z Liu, G Tian, XM Li, Y Jing… - Journal of the …, 2022 - ACS Publications
Covalent modifications of DNA and histones are key cellular epigenetic marks to regulate
gene functions. Most of these epigenetic marks are added or removed by corresponding …

Opportunity knocks for uncovering the new function of an understudied nucleosome remodeling complex member, the bromodomain PHD finger transcription factor …

H Zahid, NM Olson, WCK Pomerantz - Current opinion in chemical biology, 2021 - Elsevier
Nucleosome remodeling provides access to genomic DNA for recruitment of the
transcriptional machinery to mediate gene expression. The aberrant function of nucleosome …

Mass spectrometry-based protein complex profiling in time and space

J Zheng, X Chen, Y Yang, CSH Tan, R Tian - Analytical Chemistry, 2020 - ACS Publications
Proteins are the building blocks of life and play essential roles in every aspect of biological
processes. Proteins often conduct their functions by forming protein complexes, which are …

Genetic code expansion tools to study lysine acylation

P Neumann‐Staubitz, M Lammers… - Advanced …, 2021 - Wiley Online Library
Lysine acylation is a ubiquitous protein modification that controls various aspects of protein
function, such as the activity, localization, and stability of enzymes. Mass spectrometric …