When Gaussian process meets big data: A review of scalable GPs

H Liu, YS Ong, X Shen, J Cai - IEEE transactions on neural …, 2020 - ieeexplore.ieee.org
The vast quantity of information brought by big data as well as the evolving computer
hardware encourages success stories in the machine learning community. In the …

Riemann manifold langevin and hamiltonian monte carlo methods

M Girolami, B Calderhead - … the Royal Statistical Society Series B …, 2011 - academic.oup.com
The paper proposes Metropolis adjusted Langevin and Hamiltonian Monte Carlo sampling
methods defined on the Riemann manifold to resolve the shortcomings of existing Monte …

Spatially informed cell-type deconvolution for spatial transcriptomics

Y Ma, X Zhou - Nature biotechnology, 2022 - nature.com
Many spatially resolved transcriptomic technologies do not have single-cell resolution but
measure the average gene expression for each spot from a mixture of cells of potentially …

Statistical analysis of spatial expression patterns for spatially resolved transcriptomic studies

S Sun, J Zhu, X Zhou - Nature methods, 2020 - nature.com
Identifying genes that display spatial expression patterns in spatially resolved transcriptomic
studies is an important first step toward characterizing the spatial transcriptomic landscape …

A survey of Bayesian predictive methods for model assessment, selection and comparison

A Vehtari, J Ojanen - 2012 - projecteuclid.org
To date, several methods exist in the statistical literature for model assessment, which
purport themselves specifically as Bayesian predictive methods. The decision theoretic …

[PDF][PDF] GPstuff: Bayesian modeling with Gaussian processes

J Vanhatalo, J Riihimäki, J Hartikainen, P Jylänki… - The Journal of Machine …, 2013 - jmlr.org
GPstuff: Bayesian Modeling with Gaussian Processes Page 1 Journal of Machine Learning
Research 14 (2013) 1175-1179 Submitted 6/12; Revised 10/12; Published 4/13 GPstuff …

Hilbert space methods for reduced-rank Gaussian process regression

A Solin, S Särkkä - Statistics and Computing, 2020 - Springer
This paper proposes a novel scheme for reduced-rank Gaussian process regression. The
method is based on an approximate series expansion of the covariance function in terms of …

An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data

L Cheng, S Ramchandran, T Vatanen, N Lietzén… - Nature …, 2019 - nature.com
Biomedical research typically involves longitudinal study designs where samples from
individuals are measured repeatedly over time and the goal is to identify risk factors …

Improved prediction accuracy for disease risk mapping using Gaussian process stacked generalization

S Bhatt, E Cameron, SR Flaxman… - Journal of The …, 2017 - royalsocietypublishing.org
Maps of infectious disease—charting spatial variations in the force of infection, degree of
endemicity and the burden on human health—provide an essential evidence base to …

Fast and flexible Bayesian species distribution modelling using Gaussian processes

N Golding, BV Purse - Methods in Ecology and Evolution, 2016 - Wiley Online Library
Species distribution modelling (SDM) is widely used in ecology, and predictions of species
distributions inform both policy and ecological debates. Therefore, methods with high …