Nucleosome remodeling and epigenetics

PB Becker, JL Workman - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
Eukaryotic chromatin is kept flexible and dynamic to respond to environmental, metabolic,
and developmental cues through the action of a family of so-called “nucleosome …

Disentangling the many layers of eukaryotic transcriptional regulation

KM Lelli, M Slattery, RS Mann - Annual review of genetics, 2012 - annualreviews.org
Regulation of gene expression in eukaryotes is an extremely complex process. In this
review, we break down several critical steps, emphasizing new data and techniques that …

Overcoming the nucleosome barrier during transcript elongation

SJ Petesch, JT Lis - Trends in genetics, 2012 - cell.com
RNA polymerase II (Pol II) must break the nucleosomal barrier to gain access to DNA and
transcribe genes efficiently. New single-molecule techniques have elucidated many …

Chromatin remodelers and lineage-specific factors interact to target enhancers to establish proneurosensory fate within otic ectoderm

J Xu, J Li, T Zhang, H Jiang… - Proceedings of the …, 2021 - National Acad Sciences
Specification of Sox2+ proneurosensory progenitors within otic ectoderm is a prerequisite for
the production of sensory cells and neurons for hearing. However, the underlying molecular …

Mechanisms underlying nucleosome positioning in vivo

AL Hughes, OJ Rando - Annual review of biophysics, 2014 - annualreviews.org
It has been some 40 years since repeating subunits in eukaryotic chromatin, initially termed
“nu bodies,” were described. Four decades of study have characterized the structural …

The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1

PJ Skene, AE Hernandez, M Groudine, S Henikoff - elife, 2014 - elifesciences.org
RNA polymerase II (PolII) transcribes RNA within a chromatin context, with nucleosomes
acting as barriers to transcription. Despite these barriers, transcription through chromatin in …

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster

RV Chereji, TW Kan, MK Grudniewska… - Nucleic acids …, 2016 - academic.oup.com
Nucleosomal DNA is thought to be generally inaccessible to DNA-binding factors, such as
micrococcal nuclease (MNase). Here, we digest Drosophila chromatin with high and low …

RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast

D Ganguli, RV Chereji, JR Iben, HA Cole… - Genome …, 2014 - genome.cshlp.org
RSC and SWI/SNF are related ATP-dependent chromatin remodeling machines that move
nucleosomes, regulating access to DNA. We addressed their roles in nucleosome phasing …

Nucleosome repositioning underlies dynamic gene expression

N Nocetti, I Whitehouse - Genes & development, 2016 - genesdev.cshlp.org
Nucleosome repositioning at gene promoters is a fundamental aspect of the regulation of
gene expression. However, the extent to which nucleosome repositioning is used within …

Transcriptional co-activators: emerging roles in signaling pathways and potential therapeutic targets for diseases

PD Talukdar, U Chatterji - Signal Transduction and Targeted Therapy, 2023 - nature.com
Specific cell states in metazoans are established by the symphony of gene expression
programs that necessitate intricate synergic interactions between transcription factors and …