Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny

Q Liu, X Li, M Li, W Xu, T Schwarzacher… - BMC plant biology, 2020 - Springer
Abstract Background Oat (Avena sativa L.) is a recognized health-food, and the contributions
of its different candidate A-genome progenitor species remain inconclusive. Here, we report …

Comparison and Phylogenetic Analysis of Chloroplast Genomes of Three Medicinal and Edible Amomum Species

Y Cui, X Chen, L Nie, W Sun, H Hu, Y Lin, H Li… - International Journal of …, 2019 - mdpi.com
Amomum villosum is an important medicinal and edible plant with several
pharmacologically active volatile oils. However, identifying A. villosum from A. villosum var …

Characterizing gene tree conflict in plastome-inferred phylogenies

JF Walker, N Walker-Hale, OM Vargas, DA Larson… - PeerJ, 2019 - peerj.com
Evolutionary relationships among plants have been inferred primarily using chloroplast data.
To date, no study has comprehensively examined the plastome for gene tree conflict. Using …

The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses

RS Lu, P Li, YX Qiu - Frontiers in Plant Science, 2017 - frontiersin.org
The genus Cardiocrinum (Endlicher) Lindley (Liliaceae) comprises three herbaceous
perennial species that are distributed in East Asian temperate-deciduous forests. Although …

Completion of the Chloroplast Genomes of Five Chinese Juglans and Their Contribution to Chloroplast Phylogeny

Y Hu, KE Woeste, P Zhao - Frontiers in Plant Science, 2017 - frontiersin.org
Juglans L.(walnuts and butternuts) is an economically and ecologically important genus in
the family Juglandaceae. All Juglans are important nut and timber trees. Juglans regia …

Comparative chloroplast genomes of photosynthetic orchids: insights into evolution of the Orchidaceae and development of molecular markers for phylogenetic …

J Luo, BW Hou, ZT Niu, W Liu, QY Xue, XY Ding - PloS one, 2014 - journals.plos.org
The orchid family Orchidaceae is one of the largest angiosperm families, including many
species of important economic value. While chloroplast genomes are very informative for …

Plastid genome comparative and phylogenetic analyses of the key genera in Fagaceae: highlighting the effect of codon composition bias in phylogenetic inference

Y Yang, J Zhu, L Feng, T Zhou, G Bai, J Yang… - Frontiers in plant …, 2018 - frontiersin.org
Fagaceae is one of the largest and economically important taxa within Fagales. Considering
the incongruence among inferences from plastid and nuclear genes in the previous …

A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina MiSeq, and PacBio RS II sequencing platforms: insight into the …

Z Wu, S Gui, Z Quan, L Pan, S Wang, W Ke, D Liang… - BMC Plant …, 2014 - Springer
Background The chloroplast genome is important for plant development and plant evolution.
Nelumbo nucifera is one member of relict plants surviving from the late Cretaceous …

Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia and through Antarctica

TJ Givnish, A Zuluaga, I Marques, VKY Lam… - …, 2016 - Wiley Online Library
We present the first phylogenomic analysis of relationships among all ten families of Liliales,
based on 75 plastid genes from 35 species in 29 genera, and 97 additional plastomes …

The Plastid Genome of Najas flexilis: Adaptation to Submersed Environments Is Accompanied by the Complete Loss of the NDH Complex in an Aquatic Angiosperm

EL Peredo, UM King, DH Les - PLoS One, 2013 - journals.plos.org
The re-colonization of aquatic habitats by angiosperms has presented a difficult challenge to
plants whose long evolutionary history primarily reflects adaptations to terrestrial conditions …