A survey of tools for variant analysis of next-generation genome sequencing data

S Pabinger, A Dander, M Fischer… - Briefings in …, 2014 - academic.oup.com
Recent advances in genome sequencing technologies provide unprecedented opportunities
to characterize individual genomic landscapes and identify mutations relevant for diagnosis …

Sequencing studies in human genetics: design and interpretation

DB Goldstein, A Allen, J Keebler, EH Margulies… - Nature Reviews …, 2013 - nature.com
Next-generation sequencing is becoming the primary discovery tool in human genetics.
There have been many clear successes in identifying genes that are responsible for …

The genetic landscape of mutations in Burkitt lymphoma

C Love, Z Sun, D Jima, G Li, J Zhang, R Miles… - Nature …, 2012 - nature.com
Burkitt lymphoma is characterized by deregulation of MYC, but the contribution of other
genetic mutations to the disease is largely unknown. Here, we describe the first completely …

Clinical application of exome sequencing in undiagnosed genetic conditions

AC Need, V Shashi, Y Hitomi, K Schoch… - Journal of medical …, 2012 - jmg.bmj.com
Background There is considerable interest in the use of next-generation sequencing to help
diagnose unidentified genetic conditions, but it is difficult to predict the success rate in a …

Improved exome prioritization of disease genes through cross-species phenotype comparison

PN Robinson, S Köhler, A Oellrich, K Wang… - Genome …, 2014 - genome.cshlp.org
Numerous new disease-gene associations have been identified by whole-exome
sequencing studies in the last few years. However, many cases remain unsolved due to the …

De novo mutations in ATP1A3 cause alternating hemiplegia of childhood

EL Heinzen, KJ Swoboda, Y Hitomi, F Gurrieri… - Nature …, 2012 - nature.com
Alternating hemiplegia of childhood (AHC) is a rare, severe neurodevelopmental syndrome
characterized by recurrent hemiplegic episodes and distinct neurological manifestations …

[HTML][HTML] Rare hereditary COL4A3/COL4A4 variants may be mistaken for familial focal segmental glomerulosclerosis

AF Malone, PJ Phelan, G Hall, U Cetincelik… - Kidney international, 2014 - Elsevier
Focal segmental glomerulosclerosis (FSGS) is a histological lesion with many causes,
including inherited genetic defects, with significant proteinuria being the predominant …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

[HTML][HTML] Deficiency of asparagine synthetase causes congenital microcephaly and a progressive form of encephalopathy

EK Ruzzo, JM Capo-Chichi, B Ben-Zeev, D Chitayat… - Neuron, 2013 - cell.com
We analyzed four families that presented with a similar condition characterized by
congenital microcephaly, intellectual disability, progressive cerebral atrophy, and intractable …

A beginners guide to SNP calling from high-throughput DNA-sequencing data

A Altmann, P Weber, D Bader, M Preuß, EB Binder… - Human genetics, 2012 - Springer
High-throughput DNA sequencing (HTS) is of increasing importance in the life sciences.
One of its most prominent applications is the sequencing of whole genomes or targeted …