Microbial control of the dark end of the biological pump

GJ Herndl, T Reinthaler - Nature geoscience, 2013 - nature.com
A fraction of the carbon captured by phytoplankton in the sunlit surface ocean sinks to depth
as dead organic matter and faecal material. The microbial breakdown of this material in the …

Microbial extracellular enzymes and the marine carbon cycle

C Arnosti - Annual review of marine science, 2011 - annualreviews.org
Extracellular enzymes initiate microbial remineralization of organic matter by hydrolyzing
substrates to sizes sufficiently small to be transported across cell membranes. As much of …

Mechanisms of microbial carbon sequestration in the ocean–future research directions

N Jiao, C Robinson, F Azam, H Thomas, F Baltar… - …, 2014 - bg.copernicus.org
This paper reviews progress on understanding biological carbon sequestration in the ocean
with special reference to the microbial formation and transformation of recalcitrant dissolved …

Prokaryotic life in the deep ocean's water column

GJ Herndl, B Bayer, F Baltar… - Annual Review of …, 2023 - annualreviews.org
The oceanic waters below a depth of 200 m represent, in terms of volume, the largest habitat
of the biosphere, harboring approximately 70% of the prokaryotic biomass in the oceanic …

Centers of organic carbon burial and oxidation at the land-ocean interface

TS Bianchi, X Cui, NE Blair, DJ Burdige, TI Eglinton… - Organic …, 2018 - Elsevier
Continental margin systems collectively receive and store vast amounts of organic carbon
(OC) derived from primary productivity both on land and in the ocean, thereby playing a …

Extracellular enzymes in terrestrial, freshwater, and marine environments: perspectives on system variability and common research needs

C Arnosti, C Bell, DL Moorhead, RL Sinsabaugh… - Biogeochemistry, 2014 - Springer
Extracellular enzymes produced by heterotrophic microbial communities are major drivers of
carbon and nutrient cycling in terrestrial, freshwater, and marine environments. Although …

Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes

Z Zhao, F Baltar, GJ Herndl - Science advances, 2020 - science.org
Heterotrophic prokaryotes express extracellular hydrolytic enzymes to cleave large organic
molecules before taking up the hydrolyzed products. According to foraging theory …

Biogeochemistry of Earth before exoenzymes

N Mahmoudi, AD Steen, GP Halverson… - Nature …, 2023 - nature.com
Microorganisms that transform and oxidize organic material (that is, heterotrophs) play a
fundamental role in the geochemical cycling of key elements in the ocean. Through their …

Potential and expression of carbohydrate utilization by marine fungi in the global ocean

F Baltar, Z Zhao, GJ Herndl - Microbiome, 2021 - Springer
Background Most of the research on the cycling of carbon in the open-ocean has focused on
heterotrophic prokaryotes and eukaryotic phytoplankton, but the role of pelagic fungi …

Substrate uptake patterns shape niche separation in marine prokaryotic microbiome

Z Zhao, C Amano, T Reinthaler, MV Orellana… - Science …, 2024 - science.org
Marine heterotrophic prokaryotes primarily take up ambient substrates using transporters.
The patterns of transporters targeting particular substrates shape the ecological role of …