Function of alternative splicing

O Kelemen, P Convertini, Z Zhang, Y Wen, M Shen… - Gene, 2013 - Elsevier
Almost all polymerase II transcripts undergo alternative pre-mRNA splicing. Here, we review
the functions of alternative splicing events that have been experimentally determined. The …

Targeting VDAC-bound hexokinase II: a promising approach for concomitant anti-cancer therapy

GS Krasnov, AA Dmitriev, VA Lakunina… - Expert opinion on …, 2013 - Taylor & Francis
Introduction: Enhancement of glucose metabolism and repression of oxidative
phosphorylation followed by the Warburg effect is the common hallmark of cancer cells …

APPRIS: annotation of principal and alternative splice isoforms

JM Rodriguez, P Maietta, I Ezkurdia… - Nucleic acids …, 2013 - academic.oup.com
Here, we present APPRIS (http://appris. bioinfo. cnio. es), a database that houses
annotations of human splice isoforms. APPRIS has been designed to provide value to …

APPRIS 2017: principal isoforms for multiple gene sets

JM Rodriguez, J Rodriguez-Rivas… - Nucleic acids …, 2018 - academic.oup.com
Abstract The APPRIS database (http://appris-tools. org) uses protein structural and functional
features and information from cross-species conservation to annotate splice isoforms in …

APPRIS: selecting functionally important isoforms

JM Rodriguez, F Pozo, D Cerdán-Vélez… - Nucleic acids …, 2022 - academic.oup.com
Abstract APPRIS (https://appris. bioinfo. cnio. es) is a well-established database housing
annotations for protein isoforms for a range of species. APPRIS selects principal isoforms …

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

M Giulietti, F Piva, M D'Antonio… - Nucleic acids …, 2013 - academic.oup.com
A comprehensive knowledge of all the factors involved in splicing, both proteins and RNAs,
and of their interaction network is crucial for reaching a better understanding of this process …

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

L de la Fuente, Á Arzalluz-Luque, M Tardáguila… - Genome Biology, 2020 - Springer
Recent advances in long-read sequencing solve inaccuracies in alternative transcript
identification of full-length transcripts in short-read RNA-Seq data, which encourages the …

RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application

M D'Antonio, P D'Onorio De Meo, M Pallocca, E Picardi… - BMC genomics, 2015 - Springer
Background The study of RNA has been dramatically improved by the introduction of Next
Generation Sequencing platforms allowing massive and cheap sequencing of selected RNA …

Methods to study splicing from high-throughput RNA sequencing data

GP Alamancos, E Agirre, E Eyras - Spliceosomal Pre-mRNA Splicing …, 2014 - Springer
The development of novel high-throughput sequencing (HTS) methods for RNA (RNA-Seq)
has provided a very powerful mean to study splicing under multiple conditions at …

A survey of software for genome-wide discovery of differential splicing in RNA-Seq data

JE Hooper - Human genomics, 2014 - Springer
Alternative splicing is a major contributor to cellular diversity. Therefore the identification and
quantification of differentially spliced transcripts in genome-wide transcript analysis is an …