A survey on hypergraph neural networks: an in-depth and step-by-step guide

S Kim, SY Lee, Y Gao, A Antelmi, M Polato… - Proceedings of the 30th …, 2024 - dl.acm.org
Higher-order interactions (HOIs) are ubiquitous in real-world complex systems and
applications. Investigation of deep learning for HOIs, thus, has become a valuable agenda …

Ehragent: Code empowers large language models for complex tabular reasoning on electronic health records

W Shi, R Xu, Y Zhuang, Y Yu, J Zhang, H Wu… - arXiv preprint arXiv …, 2024 - arxiv.org
Large language models (LLMs) have demonstrated exceptional capabilities in planning and
tool utilization as autonomous agents, but few have been developed for medical problem …

Weakly-supervised scientific document classification via retrieval-augmented multi-stage training

R Xu, Y Yu, J Ho, C Yang - Proceedings of the 46th International ACM …, 2023 - dl.acm.org
Scientific document classification is a critical task for a wide range of applications, but the
cost of collecting human-labeled data can be prohibitive. We study scientific document …

Counterfactual learning on graphs: A survey

Z Guo, T Xiao, Z Wu, C Aggarwal, H Liu… - arXiv preprint arXiv …, 2023 - arxiv.org
Graph-structured data are pervasive in the real-world such as social networks, molecular
graphs and transaction networks. Graph neural networks (GNNs) have achieved great …

Learning task-aware effective brain connectivity for fmri analysis with graph neural networks

Y Yu, X Kan, H Cui, R Xu, Y Zheng… - … Conference on Big …, 2022 - ieeexplore.ieee.org
Functional magnetic resonance imaging (fMRI) has become one of the most common
imaging modalities for brain function analysis. Recently, graph neural networks (GNN) have …

R-mixup: Riemannian mixup for biological networks

X Kan, Z Li, H Cui, Y Yu, R Xu, S Yu, Z Zhang… - Proceedings of the 29th …, 2023 - dl.acm.org
Biological networks are commonly used in biomedical and healthcare domains to effectively
model the structure of complex biological systems with interactions linking biological entities …

Ram-ehr: Retrieval augmentation meets clinical predictions on electronic health records

R Xu, W Shi, Y Yu, Y Zhuang, B Jin, MD Wang… - arXiv preprint arXiv …, 2024 - arxiv.org
We present RAM-EHR, a Retrieval AugMentation pipeline to improve clinical predictions on
Electronic Health Records (EHRs). RAM-EHR first collects multiple knowledge sources …

Open visual knowledge extraction via relation-oriented multimodality model prompting

H Cui, X Fang, Z Zhang, R Xu, X Kan… - Advances in …, 2024 - proceedings.neurips.cc
Images contain rich relational knowledge that can help machines understand the world.
Existing methods on visual knowledge extraction often rely on the pre-defined format (eg …

Ptgb: Pre-train graph neural networks for brain network analysis

Y Yang, H Cui, C Yang - arXiv preprint arXiv:2305.14376, 2023 - arxiv.org
The human brain is the central hub of the neurobiological system, controlling behavior and
cognition in complex ways. Recent advances in neuroscience and neuroimaging analysis …

Beyond known reality: Exploiting counterfactual explanations for medical research

T Tanyel, S Ayvaz, B Keserci - arXiv preprint arXiv:2307.02131, 2023 - arxiv.org
This study employs counterfactual explanations to explore" what if?" scenarios in medical
research, with the aim of expanding our understanding beyond existing boundaries …